Difference between revisions of "TSS:Mm 100675.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=BC007129:0 AK161560:0 AK044582:0 AK042206:0 ENSMUST00000101638.3:-15 ENSMUST00000125832.7:-15 AB008117:-15 U88618:26 AB005131:26 ENSMUST00000145223.1:-30 NM_010718:-79 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 9: | Line 9: | ||
|entrez_id=16886 | |entrez_id=16886 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=Limk-2 | + | |gene_alias=Limk-2{{!}}whe |
|gene_description=LIM motif-containing protein kinase 2 | |gene_description=LIM motif-containing protein kinase 2 | ||
|gene_id=16886 | |gene_id=16886 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_010718 | |nearest_refseq=NM_010718 | ||
|nearest_unigene=Mm.124176 | |nearest_unigene=Mm.124176 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=mouse | |species=mouse | ||
|start=3409116 | |start=3409116 | ||
|start_of_center_position=3409137 | |start_of_center_position=3409137 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=BC007129 AK161560 AK044582 AK042206 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100675.1 | |tss_id=mm_100675.1 | ||
Revision as of 16:22, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3409137 |
|---|---|
| End of the center position in the TSS region: | 3409138 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC007129 AK161560 AK044582 AK042206 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | BC007129:0 AK161560:0 AK044582:0 AK042206:0 ENSMUST00000101638.3:-15 ENSMUST00000125832.7:-15 AB008117:-15 U88618:26 AB005131:26 ENSMUST00000145223.1:-30 NM_010718:-79 |
TATA-Box annotation
| Distance to TSS: | 100 |
|---|---|
| Nearest PromoterID: | NM_010718 |
| Entrez ID: | 16886 |
| Nearest Unigene: | Mm.124176 |
| Nearest Refseq: | NM_010718 |
| Nearest Ensembl: | ENSMUSG00000020451 |
| Gene Name: | LIM motif-containing protein kinase 2 |
| Gene Alias: | Limk-2|whe |
| Gene Description: | LIM motif-containing protein kinase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
