Difference between revisions of "TSS:Mm 100681.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000120551.1:120 | + | |all_trans=LF198340:-5 MA433917:-5 ENSMUST00000120551.1:120 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=-5 |
|distance_to_tss=-8519 | |distance_to_tss=-8519 | ||
|end=3471522 | |end=3471522 | ||
| Line 12: | Line 12: | ||
|gene_description=microRNA 3470a | |gene_description=microRNA 3470a | ||
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=Mir3470a |
|gene_source=MGI:3650072 | |gene_source=MGI:3650072 | ||
|gene_symbol=Gm11945 | |gene_symbol=Gm11945 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_037301 | |nearest_refseq=NR_037301 | ||
|nearest_unigene= | |nearest_unigene= | ||
| − | |num_trans= | + | |num_trans=3 |
|species=mouse | |species=mouse | ||
|start=3471496 | |start=3471496 | ||
|start_of_center_position=3471509 | |start_of_center_position=3471509 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF198340 MA433917 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_100681.1 | |tss_id=mm_100681.1 | ||
Latest revision as of 16:22, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3471509 |
|---|---|
| End of the center position in the TSS region: | 3471510 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF198340 MA433917 |
|---|---|
| Distance: | -5 |
| Num_trans: | 3 |
| All_trans: | LF198340:-5 MA433917:-5 ENSMUST00000120551.1:120 |
TATA-Box annotation
| Distance to TSS: | -8519 |
|---|---|
| Nearest PromoterID: | NR_037301 |
| Entrez ID: | 100499518 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_037301 |
| Nearest Ensembl: | ENSMUSG00000095323 |
| Gene Name: | Mir3470a |
| Gene Alias: | mmu-mir-3470a |
| Gene Description: | microRNA 3470a |
| Gene Type: | ncRNA |
| CpG%: | 0.045 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
