Difference between revisions of "TSS:Mm 100691.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000020718.9 | + | |all_trans=ENSMUST00000020718.9:0 AK009426:0 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:1354727 | |hgnc_mgi_id=MGI:1354727 | ||
|nearest_ensembl=ENSMUSG00000020439 | |nearest_ensembl=ENSMUSG00000020439 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284428 |
|nearest_refseq=NM_013870 | |nearest_refseq=NM_013870 | ||
|nearest_unigene=Mm.188516 | |nearest_unigene=Mm.188516 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=3527916 | |start=3527916 | ||
|start_of_center_position=3527937 | |start_of_center_position=3527937 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000020718.9 | + | |transcript_name=ENSMUST00000020718.9 AK009426 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100691.1 | |tss_id=mm_100691.1 | ||
Revision as of 16:23, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3527937 |
|---|---|
| End of the center position in the TSS region: | 3527938 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000020718.9 AK009426 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | ENSMUST00000020718.9:0 AK009426:0 |
TATA-Box annotation
| Distance to TSS: | 11354 |
|---|---|
| Nearest PromoterID: | NM_001284428 |
| Entrez ID: | 29856 |
| Nearest Unigene: | Mm.188516 |
| Nearest Refseq: | NM_013870 |
| Nearest Ensembl: | ENSMUSG00000020439 |
| Gene Name: | smoothelin |
| Gene Alias: | smsmo |
| Gene Description: | smoothelin |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
