Difference between revisions of "TSS:Mm 100696.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK160492:130 AK083947:484 | + | |all_trans=AK160492:130 LF225624:-370 MA461201:-370 AK083947:484 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:1354727 | |hgnc_mgi_id=MGI:1354727 | ||
|nearest_ensembl=ENSMUSG00000020439 | |nearest_ensembl=ENSMUSG00000020439 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284428 |
|nearest_refseq=NM_013870 | |nearest_refseq=NM_013870 | ||
|nearest_unigene=Mm.188516 | |nearest_unigene=Mm.188516 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=3530046 | |start=3530046 | ||
Revision as of 16:23, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 3530055 |
|---|---|
| End of the center position in the TSS region: | 3530056 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK160492 |
|---|---|
| Distance: | 130 |
| Num_trans: | 4 |
| All_trans: | AK160492:130 LF225624:-370 MA461201:-370 AK083947:484 |
TATA-Box annotation
| Distance to TSS: | 9236 |
|---|---|
| Nearest PromoterID: | NM_001284428 |
| Entrez ID: | 29856 |
| Nearest Unigene: | Mm.188516 |
| Nearest Refseq: | NM_013870 |
| Nearest Ensembl: | ENSMUSG00000020439 |
| Gene Name: | smoothelin |
| Gene Alias: | smsmo |
| Gene Description: | smoothelin |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
