Difference between revisions of "TSS:Mm 100697.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK220027:-4 AK209740:158 AK217205:159 |chr=chr11 |cpg_percent=0.01 |distance=-4 |distance_to_tss=7901 |end=3531409 |entrez_id=29856 |gc_percent=0.646766...") |
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|distance_to_tss=7901 | |distance_to_tss=7901 | ||
|end=3531409 | |end=3531409 | ||
| + | |end_of_center_position=3531392 | ||
|entrez_id=29856 | |entrez_id=29856 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| Line 13: | Line 14: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000020439 | |nearest_ensembl=ENSMUSG00000020439 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284428 |
|nearest_refseq=NM_013870 | |nearest_refseq=NM_013870 | ||
|nearest_unigene=Mm.188516 | |nearest_unigene=Mm.188516 | ||
| Line 19: | Line 20: | ||
|species=mouse | |species=mouse | ||
|start=3531373 | |start=3531373 | ||
| + | |start_of_center_position=3531391 | ||
|strand=- | |strand=- | ||
|transcript_name=AK220027 | |transcript_name=AK220027 | ||
Latest revision as of 16:23, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3531391 |
|---|---|
| End of the center position in the TSS region: | 3531392 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK220027 |
|---|---|
| Distance: | -4 |
| Num_trans: | 3 |
| All_trans: | AK220027:-4 AK209740:158 AK217205:159 |
TATA-Box annotation
| Distance to TSS: | 7901 |
|---|---|
| Nearest PromoterID: | NM_001284428 |
| Entrez ID: | 29856 |
| Nearest Unigene: | Mm.188516 |
| Nearest Refseq: | NM_013870 |
| Nearest Ensembl: | ENSMUSG00000020439 |
| Gene Name: | Smtn |
| Gene Alias: | smsmo |
| Gene Description: | smoothelin |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
