Difference between revisions of "TSS:Mm 100700.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000075118.9:0 ENSMUST00000154861.7:0 ENSMUST00000136243.1:0 ENSMUST00000151804.1:0 AF064236:0 AJ010305:0 AK085412:0 BC010599:0 AK166385:0 AK170516:0 ENSMUST00000020721.14:-25 ENSMUST00000170588.7:-25 | + | |all_trans=ENSMUST00000075118.9:0 ENSMUST00000154861.7:0 ENSMUST00000136243.1:0 ENSMUST00000151804.1:0 AF064236:0 AJ010305:0 AK085412:0 BC010599:0 AK166385:0 AK170516:0 ENSMUST00000020721.14:-25 ENSMUST00000170588.7:-25 NM_001284427:-25 NM_001284429:-25 NM_001159284:-25 NM_013870:-25 NM_001284428:-25 AK030932:-25 AK138898:-25 BC066192:59 BC069836:59 BC069839:59 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:1354727 | |hgnc_mgi_id=MGI:1354727 | ||
|nearest_ensembl=ENSMUSG00000020439 | |nearest_ensembl=ENSMUSG00000020439 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284428 |
|nearest_refseq=NM_013870 | |nearest_refseq=NM_013870 | ||
|nearest_unigene=Mm.188516 | |nearest_unigene=Mm.188516 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=mouse | |species=mouse | ||
|start=3539228 | |start=3539228 | ||
Revision as of 16:23, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3539247 |
|---|---|
| End of the center position in the TSS region: | 3539248 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000075118.9 ENSMUST00000154861.7 ENSMUST00000136243.1 ENSMUST00000151804.1 AF064236 AJ010305 AK085412 BC010599 AK166385 AK170516 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENSMUST00000075118.9:0 ENSMUST00000154861.7:0 ENSMUST00000136243.1:0 ENSMUST00000151804.1:0 AF064236:0 AJ010305:0 AK085412:0 BC010599:0 AK166385:0 AK170516:0 ENSMUST00000020721.14:-25 ENSMUST00000170588.7:-25 NM_001284427:-25 NM_001284429:-25 NM_001159284:-25 NM_013870:-25 NM_001284428:-25 AK030932:-25 AK138898:-25 BC066192:59 BC069836:59 BC069839:59 |
TATA-Box annotation
| Distance to TSS: | 44 |
|---|---|
| Nearest PromoterID: | NM_001284428 |
| Entrez ID: | 29856 |
| Nearest Unigene: | Mm.188516 |
| Nearest Refseq: | NM_013870 |
| Nearest Ensembl: | ENSMUSG00000020439 |
| Gene Name: | smoothelin |
| Gene Alias: | smsmo |
| Gene Description: | smoothelin |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
