Difference between revisions of "TSS:Mm 100702.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK033381:0 AK083955:-9 | + | |all_trans=AK033381:0 AK083955:-9 AK048213:-18 AK049839:-18 ENSMUST00000153313.8:-22 AK165129:-22 AK162835:-25 ENSMUST00000132077.3:-28 NR_002322:-28 NR_110490:-28 DQ517434:-28 BC048828:60 ENSMUST00000184580.1:147 ENSMUST00000226545.1:190 ENSMUST00000227137.1:340 ENSMUST00000226724.1:-398 ENSMUST00000183605.1:443 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:2144114 | |hgnc_mgi_id=MGI:2144114 | ||
|nearest_ensembl=ENSMUSG00000056579 | |nearest_ensembl=ENSMUSG00000056579 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_002322 |
|nearest_refseq=NR_002321 | |nearest_refseq=NR_002321 | ||
|nearest_unigene=Mm.390314 | |nearest_unigene=Mm.390314 | ||
Revision as of 16:23, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3647489 |
|---|---|
| End of the center position in the TSS region: | 3647490 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK033381 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | AK033381:0 AK083955:-9 AK048213:-18 AK049839:-18 ENSMUST00000153313.8:-22 AK165129:-22 AK162835:-25 ENSMUST00000132077.3:-28 NR_002322:-28 NR_110490:-28 DQ517434:-28 BC048828:60 ENSMUST00000184580.1:147 ENSMUST00000226545.1:190 ENSMUST00000227137.1:340 ENSMUST00000226724.1:-398 ENSMUST00000183605.1:443 |
TATA-Box annotation
| Distance to TSS: | 46 |
|---|---|
| Nearest PromoterID: | NR_002322 |
| Entrez ID: | 544752 |
| Nearest Unigene: | Mm.390314 |
| Nearest Refseq: | NR_002321 |
| Nearest Ensembl: | ENSMUSG00000056579 |
| Gene Name: | taurine upregulated gene 1 |
| Gene Alias: | AI316828 |
| Gene Description: | taurine upregulated gene 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.318408 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
