Difference between revisions of "TSS:Mm 100706.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000182330.1:-14 NR_002321 | + | |all_trans=ENSMUST00000182330.1:-14 NR_002321:170 AK088174:170 ENSMUST00000144852.1:172 DQ517435:176 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_002321 | |nearest_refseq=NR_002321 | ||
|nearest_unigene=Mm.390314 | |nearest_unigene=Mm.390314 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=3648983 | |start=3648983 | ||
|start_of_center_position=3649005 | |start_of_center_position=3649005 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-48(GGCCATTTAAAG,-,0.00),-46(CCATTTAAAGGA,+,0.00) |
|transcript_name=ENSMUST00000182330.1 | |transcript_name=ENSMUST00000182330.1 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:23, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3649005 |
|---|---|
| End of the center position in the TSS region: | 3649006 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000182330.1 |
|---|---|
| Distance: | -14 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000182330.1:-14 NR_002321:170 AK088174:170 ENSMUST00000144852.1:172 DQ517435:176 |
TATA-Box annotation
| Distance to TSS: | -192 |
|---|---|
| Nearest PromoterID: | NR_002321 |
| Entrez ID: | 544752 |
| Nearest Unigene: | Mm.390314 |
| Nearest Refseq: | NR_002321 |
| Nearest Ensembl: | ENSMUSG00000056579 |
| Gene Name: | taurine upregulated gene 1 |
| Gene Alias: | AI316828 |
| Gene Description: | taurine upregulated gene 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.085 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -48(GGCCATTTAAAG,-,0.00),-46(CCATTTAAAGGA,+,0.00) |
