Difference between revisions of "TSS:Mm 100707.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000182330.1:20 NR_002321 | + | |all_trans=ENSMUST00000182330.1:20 NR_002321:248 AK088174:248 ENSMUST00000144852.1:250 DQ517435:254 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_002321 | |nearest_refseq=NR_002321 | ||
|nearest_unigene=Mm.390314 | |nearest_unigene=Mm.390314 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=3649061 | |start=3649061 | ||
|start_of_center_position=3649069 | |start_of_center_position=3649069 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=15(GGCCATTTAAAG,-,0.00),17(CCATTTAAAGGA,+,0.00) |
|transcript_name=ENSMUST00000182330.1 | |transcript_name=ENSMUST00000182330.1 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:23, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3649069 |
|---|---|
| End of the center position in the TSS region: | 3649070 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000182330.1 |
|---|---|
| Distance: | 20 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000182330.1:20 NR_002321:248 AK088174:248 ENSMUST00000144852.1:250 DQ517435:254 |
TATA-Box annotation
| Distance to TSS: | -255 |
|---|---|
| Nearest PromoterID: | NR_002321 |
| Entrez ID: | 544752 |
| Nearest Unigene: | Mm.390314 |
| Nearest Refseq: | NR_002321 |
| Nearest Ensembl: | ENSMUSG00000056579 |
| Gene Name: | taurine upregulated gene 1 |
| Gene Alias: | AI316828 |
| Gene Description: | taurine upregulated gene 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.1 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 15(GGCCATTTAAAG,-,0.00),17(CCATTTAAAGGA,+,0.00) |
