Difference between revisions of "TSS:Mm 100708.1"
From referenceTSS
| Line 4: | Line 4: | ||
|ORP-4= | |ORP-4= | ||
|OSBPL1= | |OSBPL1= | ||
| − | |all_trans=BC051185:-11 BC031794:-15 BC058602:-15 ENSMUST00000102950.9:-32 ENSMUST00000101632.3:-32 AK044598:-32 | + | |all_trans=BC051185:-11 BC031794:-15 BC058602:-15 ENSMUST00000102950.9:-32 ENSMUST00000101632.3:-32 AK044598:-32 NM_001302631:-43 NM_001302630:-43 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 13: | Line 13: | ||
|entrez_id=74309 | |entrez_id=74309 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=1700095P05Rik | + | |gene_alias=1700095P05Rik{{!}}C630001G20Rik{{!}}Gm244{{!}}ORP-4{{!}}OSBPL1 |
|gene_description=oxysterol binding protein 2 | |gene_description=oxysterol binding protein 2 | ||
|gene_id=74309 | |gene_id=74309 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=MGI:1921559 | |hgnc_mgi_id=MGI:1921559 | ||
|nearest_ensembl=ENSMUSG00000020435 | |nearest_ensembl=ENSMUSG00000020435 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001302630 |
|nearest_refseq=NM_152818 | |nearest_refseq=NM_152818 | ||
|nearest_unigene=Mm.61022 | |nearest_unigene=Mm.61022 | ||
| − | |num_trans= | + | |num_trans=8 |
|species=mouse | |species=mouse | ||
|start=3722160 | |start=3722160 | ||
Revision as of 16:23, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3722172 |
|---|---|
| End of the center position in the TSS region: | 3722173 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC051185 |
|---|---|
| Distance: | -11 |
| Num_trans: | 8 |
| All_trans: | BC051185:-11 BC031794:-15 BC058602:-15 ENSMUST00000102950.9:-32 ENSMUST00000101632.3:-32 AK044598:-32 NM_001302631:-43 NM_001302630:-43 |
TATA-Box annotation
| Distance to TSS: | 55 |
|---|---|
| Nearest PromoterID: | NM_001302630 |
| Entrez ID: | 74309 |
| Nearest Unigene: | Mm.61022 |
| Nearest Refseq: | NM_152818 |
| Nearest Ensembl: | ENSMUSG00000020435 |
| Gene Name: | oxysterol binding protein 2 |
| Gene Alias: | 1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1 |
| Gene Description: | oxysterol binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
