Difference between revisions of "TSS:Mm 100710.1"
From referenceTSS
| Line 4: | Line 4: | ||
|ORP-4= | |ORP-4= | ||
|OSBPL1= | |OSBPL1= | ||
| − | |all_trans=ENSMUST00000155197.1:-30 | + | |all_trans=NM_001363164:27 ENSMUST00000155197.1:-30 BC058356:-424 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=27 |
| − | |distance_to_tss=- | + | |distance_to_tss=-30 |
|end=3774702 | |end=3774702 | ||
|end_of_center_position=3774699 | |end_of_center_position=3774699 | ||
|entrez_id=74309 | |entrez_id=74309 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=1700095P05Rik | + | |gene_alias=1700095P05Rik{{!}}C630001G20Rik{{!}}Gm244{{!}}ORP-4{{!}}OSBPL1 |
|gene_description=oxysterol binding protein 2 | |gene_description=oxysterol binding protein 2 | ||
|gene_id=74309 | |gene_id=74309 | ||
| Line 23: | Line 23: | ||
|hgnc_mgi_id=MGI:1921559 | |hgnc_mgi_id=MGI:1921559 | ||
|nearest_ensembl=ENSMUSG00000020435 | |nearest_ensembl=ENSMUSG00000020435 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001363164 |
|nearest_refseq=NM_152818 | |nearest_refseq=NM_152818 | ||
|nearest_unigene=Mm.61022 | |nearest_unigene=Mm.61022 | ||
| Line 31: | Line 31: | ||
|start_of_center_position=3774698 | |start_of_center_position=3774698 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001363164 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100710.1 | |tss_id=mm_100710.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Revision as of 16:23, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3774698 |
|---|---|
| End of the center position in the TSS region: | 3774699 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001363164 |
|---|---|
| Distance: | 27 |
| Num_trans: | 3 |
| All_trans: | NM_001363164:27 ENSMUST00000155197.1:-30 BC058356:-424 |
TATA-Box annotation
| Distance to TSS: | -30 |
|---|---|
| Nearest PromoterID: | NM_001363164 |
| Entrez ID: | 74309 |
| Nearest Unigene: | Mm.61022 |
| Nearest Refseq: | NM_152818 |
| Nearest Ensembl: | ENSMUSG00000020435 |
| Gene Name: | oxysterol binding protein 2 |
| Gene Alias: | 1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1 |
| Gene Description: | oxysterol binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
