Difference between revisions of "TSS:Mm 100714.1"
From referenceTSS
| Line 4: | Line 4: | ||
|ORP-4= | |ORP-4= | ||
|OSBPL1= | |OSBPL1= | ||
| − | |all_trans=ENSMUST00000070552.13:-176 ENSMUST00000135250.1:-176 | + | |all_trans=ENSMUST00000070552.13:-176 ENSMUST00000135250.1:-176 NM_001363163:-176 NM_152818:-176 AK049816:-176 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| Line 13: | Line 13: | ||
|entrez_id=74309 | |entrez_id=74309 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
| − | |gene_alias=1700095P05Rik | + | |gene_alias=1700095P05Rik{{!}}C630001G20Rik{{!}}Gm244{{!}}ORP-4{{!}}OSBPL1 |
|gene_description=oxysterol binding protein 2 | |gene_description=oxysterol binding protein 2 | ||
|gene_id=74309 | |gene_id=74309 | ||
| Line 26: | Line 26: | ||
|nearest_refseq=NM_152818 | |nearest_refseq=NM_152818 | ||
|nearest_unigene=Mm.61022 | |nearest_unigene=Mm.61022 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=3863716 | |start=3863716 | ||
|start_of_center_position=3863721 | |start_of_center_position=3863721 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000070552.13 ENSMUST00000135250.1 NM_152818 | + | |transcript_name=ENSMUST00000070552.13 ENSMUST00000135250.1 NM_001363163 NM_152818 AK049816 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100714.1 | |tss_id=mm_100714.1 | ||
Revision as of 16:23, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3863721 |
|---|---|
| End of the center position in the TSS region: | 3863722 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000070552.13 ENSMUST00000135250.1 NM_001363163 NM_152818 AK049816 |
|---|---|
| Distance: | -176 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000070552.13:-176 ENSMUST00000135250.1:-176 NM_001363163:-176 NM_152818:-176 AK049816:-176 |
TATA-Box annotation
| Distance to TSS: | 181 |
|---|---|
| Nearest PromoterID: | NM_152818 |
| Entrez ID: | 74309 |
| Nearest Unigene: | Mm.61022 |
| Nearest Refseq: | NM_152818 |
| Nearest Ensembl: | ENSMUSG00000020435 |
| Gene Name: | oxysterol binding protein 2 |
| Gene Alias: | 1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1 |
| Gene Description: | oxysterol binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
