Difference between revisions of "TSS:Mm 100725.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Tcn-2= | |Tcn-2= | ||
| − | |all_trans=AK198501:-32 AK206141:-33 AK187194:-33 AK191218:-33 AK216881:-33 AK185167:54 AK186678:54 | + | |all_trans=AK198501:-32 AK206141:-33 AK187194:-33 AK191218:-33 AK216881:-33 AK185167:54 AK186678:54 LF225669:63 MA461246:63 LF225672:-307 MA461249:-307 LF225668:310 MA461245:310 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 10: | Line 10: | ||
|entrez_id=21452 | |entrez_id=21452 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=AW208754 | + | |gene_alias=AW208754{{!}}Tcn-2 |
|gene_description=transcobalamin 2 | |gene_description=transcobalamin 2 | ||
|gene_id=21452 | |gene_id=21452 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_015749 | |nearest_refseq=NM_015749 | ||
|nearest_unigene=Mm.20948 | |nearest_unigene=Mm.20948 | ||
| − | |num_trans= | + | |num_trans=13 |
|species=mouse | |species=mouse | ||
|start=3923515 | |start=3923515 | ||
Revision as of 16:24, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3923520 |
|---|---|
| End of the center position in the TSS region: | 3923521 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK198501 |
|---|---|
| Distance: | -32 |
| Num_trans: | 13 |
| All_trans: | AK198501:-32 AK206141:-33 AK187194:-33 AK191218:-33 AK216881:-33 AK185167:54 AK186678:54 LF225669:63 MA461246:63 LF225672:-307 MA461249:-307 LF225668:310 MA461245:310 |
TATA-Box annotation
| Distance to TSS: | 8440 |
|---|---|
| Nearest PromoterID: | NM_001130459 |
| Entrez ID: | 21452 |
| Nearest Unigene: | Mm.20948 |
| Nearest Refseq: | NM_015749 |
| Nearest Ensembl: | ENSMUSG00000020432 |
| Gene Name: | transcobalamin 2 |
| Gene Alias: | AW208754|Tcn-2 |
| Gene Description: | transcobalamin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
