Difference between revisions of "TSS:Mm 100727.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Tcn-2= | |Tcn-2= | ||
| − | |all_trans= | + | |all_trans=AK196753:-32 AK197212:-32 AF090686:-39 ENSMUST00000109992.7:-245 ENSMUST00000109988.1:-260 ENSMUST00000109990.7:-416 NM_001130459:-417 AK143761:-417 ENSMUST00000020710.10:-451 AK161618:-466 AK147176:-470 AK133707:-498 ENSMUST00000109989.9:-500 NM_015749:-500 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=-32 |
|distance_to_tss=436 | |distance_to_tss=436 | ||
|end=3931544 | |end=3931544 | ||
| Line 10: | Line 10: | ||
|entrez_id=21452 | |entrez_id=21452 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=AW208754 | + | |gene_alias=AW208754{{!}}Tcn-2 |
|gene_description=transcobalamin 2 | |gene_description=transcobalamin 2 | ||
|gene_id=21452 | |gene_id=21452 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_015749 | |nearest_refseq=NM_015749 | ||
|nearest_unigene=Mm.20948 | |nearest_unigene=Mm.20948 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=mouse | |species=mouse | ||
|start=3931505 | |start=3931505 | ||
|start_of_center_position=3931524 | |start_of_center_position=3931524 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AK196753 AK197212 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100727.1 | |tss_id=mm_100727.1 | ||
Revision as of 16:24, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3931524 |
|---|---|
| End of the center position in the TSS region: | 3931525 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK196753 AK197212 |
|---|---|
| Distance: | -32 |
| Num_trans: | 14 |
| All_trans: | AK196753:-32 AK197212:-32 AF090686:-39 ENSMUST00000109992.7:-245 ENSMUST00000109988.1:-260 ENSMUST00000109990.7:-416 NM_001130459:-417 AK143761:-417 ENSMUST00000020710.10:-451 AK161618:-466 AK147176:-470 AK133707:-498 ENSMUST00000109989.9:-500 NM_015749:-500 |
TATA-Box annotation
| Distance to TSS: | 436 |
|---|---|
| Nearest PromoterID: | NM_001130459 |
| Entrez ID: | 21452 |
| Nearest Unigene: | Mm.20948 |
| Nearest Refseq: | NM_015749 |
| Nearest Ensembl: | ENSMUSG00000020432 |
| Gene Name: | transcobalamin 2 |
| Gene Alias: | AW208754|Tcn-2 |
| Gene Description: | transcobalamin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
