Difference between revisions of "TSS:Mm 100730.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Tcn-2= | |Tcn-2= | ||
| − | |all_trans=ENSMUST00000109988.1:0 ENSMUST00000109992.7:3 ENSMUST00000109990.7:-144 NM_001130459 | + | |all_trans=ENSMUST00000109988.1:0 ENSMUST00000109992.7:3 ENSMUST00000109990.7:-144 NM_001130459:-145 AK143761:-145 ENSMUST00000020710.10:-179 AK161618:-194 AK147176:-198 AF090686:209 AK196753:216 AK197212:216 AK133707:-226 ENSMUST00000109989.9:-228 NM_015749:-228 AK170401:-249 ENSMUST00000109991.7:-262 NM_001130458:-262 ENSMUST00000109993.8:-343 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| Line 10: | Line 10: | ||
|entrez_id=21452 | |entrez_id=21452 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=AW208754 | + | |gene_alias=AW208754{{!}}Tcn-2 |
|gene_description=transcobalamin 2 | |gene_description=transcobalamin 2 | ||
|gene_id=21452 | |gene_id=21452 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_015749 | |nearest_refseq=NM_015749 | ||
|nearest_unigene=Mm.20948 | |nearest_unigene=Mm.20948 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=mouse | |species=mouse | ||
|start=3931791 | |start=3931791 | ||
|start_of_center_position=3931803 | |start_of_center_position=3931803 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=51(GGGTCTTTAAAG,-,0.00),52(GGTCTTTAAAGC,-,0.00),53(GTCTTTAAAGCG,+,0.00) |
|transcript_name=ENSMUST00000109988.1 | |transcript_name=ENSMUST00000109988.1 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:24, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 3931803 |
|---|---|
| End of the center position in the TSS region: | 3931804 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000109988.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENSMUST00000109988.1:0 ENSMUST00000109992.7:3 ENSMUST00000109990.7:-144 NM_001130459:-145 AK143761:-145 ENSMUST00000020710.10:-179 AK161618:-194 AK147176:-198 AF090686:209 AK196753:216 AK197212:216 AK133707:-226 ENSMUST00000109989.9:-228 NM_015749:-228 AK170401:-249 ENSMUST00000109991.7:-262 NM_001130458:-262 ENSMUST00000109993.8:-343 |
TATA-Box annotation
| Distance to TSS: | 157 |
|---|---|
| Nearest PromoterID: | NM_001130459 |
| Entrez ID: | 21452 |
| Nearest Unigene: | Mm.20948 |
| Nearest Refseq: | NM_015749 |
| Nearest Ensembl: | ENSMUSG00000020432 |
| Gene Name: | transcobalamin 2 |
| Gene Alias: | AW208754|Tcn-2 |
| Gene Description: | transcobalamin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 51(GGGTCTTTAAAG,-,0.00),52(GGTCTTTAAAGC,-,0.00),53(GTCTTTAAAGCG,+,0.00) |
