Difference between revisions of "TSS:Mm 100733.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.01 |distance= |distance_to_tss=-323 |end=3983318 |entrez_id=53897 |gc_percent=0.547264 |gene_alias=Cst|Gcst |gene_description=galactose-3...") |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |Gcst= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-323 | |distance_to_tss=-323 | ||
|end=3983318 | |end=3983318 | ||
| + | |end_of_center_position=3983314 | ||
|entrez_id=53897 | |entrez_id=53897 | ||
|gc_percent=0.547264 | |gc_percent=0.547264 | ||
| − | |gene_alias=Cst | + | |gene_alias=Cst{{!}}Gcst |
|gene_description=galactose-3-O-sulfotransferase 1 | |gene_description=galactose-3-O-sulfotransferase 1 | ||
|gene_name=Gal3st1 | |gene_name=Gal3st1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000049721 | |nearest_ensembl=ENSMUSG00000049721 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_016922 |
|nearest_refseq=NM_016922 | |nearest_refseq=NM_016922 | ||
|nearest_unigene=Mm.103414 | |nearest_unigene=Mm.103414 | ||
| Line 18: | Line 20: | ||
|species=mouse | |species=mouse | ||
|start=3983308 | |start=3983308 | ||
| + | |start_of_center_position=3983313 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(CCTTTTATGGAC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 16:24, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3983313 |
|---|---|
| End of the center position in the TSS region: | 3983314 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -323 |
|---|---|
| Nearest PromoterID: | NM_016922 |
| Entrez ID: | 53897 |
| Nearest Unigene: | Mm.103414 |
| Nearest Refseq: | NM_016922 |
| Nearest Ensembl: | ENSMUSG00000049721 |
| Gene Name: | Gal3st1 |
| Gene Alias: | Cst|Gcst |
| Gene Description: | galactose-3-O-sulfotransferase 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(CCTTTTATGGAC,+,0.00) |
