Difference between revisions of "TSS:Mm 100743.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Spf= | |Spf= | ||
|TAP= | |TAP= | ||
| − | |all_trans=ENSMUST00000136420.1:0 NM_144520 | + | |all_trans=ENSMUST00000136420.1:0 NM_144520:0 BC005759:0 ENSMUST00000123901.7:28 ENSMUST00000003681.7:-62 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 11: | Line 11: | ||
|entrez_id=67815 | |entrez_id=67815 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=1300013M05Rik | + | |gene_alias=1300013M05Rik{{!}}Spf{{!}}TAP |
|gene_description=SEC14-like lipid binding 2 | |gene_description=SEC14-like lipid binding 2 | ||
|gene_id=67815 | |gene_id=67815 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_144520 | |nearest_refseq=NM_144520 | ||
|nearest_unigene=Mm.253922 | |nearest_unigene=Mm.253922 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=4118723 | |start=4118723 | ||
|start_of_center_position=4118746 | |start_of_center_position=4118746 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-72(TCCTTTAAGAGG,-,0.00),-71(CCTTTAAGAGGC,+,0.00) |
| − | |transcript_name=ENSMUST00000136420.1 NM_144520 | + | |transcript_name=ENSMUST00000136420.1 NM_144520 BC005759 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100743.1 | |tss_id=mm_100743.1 | ||
Revision as of 16:24, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4118746 |
|---|---|
| End of the center position in the TSS region: | 4118747 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000136420.1 NM_144520 BC005759 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5 |
| All_trans: | ENSMUST00000136420.1:0 NM_144520:0 BC005759:0 ENSMUST00000123901.7:28 ENSMUST00000003681.7:-62 |
TATA-Box annotation
| Distance to TSS: | -17 |
|---|---|
| Nearest PromoterID: | NM_144520 |
| Entrez ID: | 67815 |
| Nearest Unigene: | Mm.253922 |
| Nearest Refseq: | NM_144520 |
| Nearest Ensembl: | ENSMUSG00000003585 |
| Gene Name: | SEC14-like lipid binding 2 |
| Gene Alias: | 1300013M05Rik|Spf|TAP |
| Gene Description: | SEC14-like lipid binding 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -72(TCCTTTAAGAGG,-,0.00),-71(CCTTTAAGAGGC,+,0.00) |
