Difference between revisions of "TSS:Mm 100748.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000132712.1:0 AK220409:0 AK161195:0 ENSMUST00000093381.10:-9 AK143216:9 ENSMUST00000101626.8 | + | |all_trans=ENSMUST00000132712.1:0 AK220409:0 AK161195:0 ENSMUST00000093381.10:-9 AK143216:9 ENSMUST00000101626.8:-11 NM_001164620:-11 NM_177616:-11 AK133165:-11 AK076934:13 ENSMUST00000139099.7:15 ENSMUST00000133962.7:15 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 9: | Line 9: | ||
|entrez_id=216516 | |entrez_id=216516 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=4930562D19Rik | + | |gene_alias=4930562D19Rik{{!}}mKIAA1656 |
|gene_description=coiled-coil domain containing 157 | |gene_description=coiled-coil domain containing 157 | ||
|gene_id=216516 | |gene_id=216516 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_177616 | |nearest_refseq=NM_177616 | ||
|nearest_unigene=Mm.386854 | |nearest_unigene=Mm.386854 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=4160232 | |start=4160232 | ||
Revision as of 16:24, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4160257 |
|---|---|
| End of the center position in the TSS region: | 4160258 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000132712.1 AK220409 AK161195 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENSMUST00000132712.1:0 AK220409:0 AK161195:0 ENSMUST00000093381.10:-9 AK143216:9 ENSMUST00000101626.8:-11 NM_001164620:-11 NM_177616:-11 AK133165:-11 AK076934:13 ENSMUST00000139099.7:15 ENSMUST00000133962.7:15 |
TATA-Box annotation
| Distance to TSS: | 36 |
|---|---|
| Nearest PromoterID: | NM_177616 |
| Entrez ID: | 216516 |
| Nearest Unigene: | Mm.386854 |
| Nearest Refseq: | NM_177616 |
| Nearest Ensembl: | ENSMUSG00000051427 |
| Gene Name: | coiled-coil domain containing 157 |
| Gene Alias: | 4930562D19Rik|mKIAA1656 |
| Gene Description: | coiled-coil domain containing 157 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
