Difference between revisions of "TSS:Mm 100766.1"
From referenceTSS
| Line 4: | Line 4: | ||
|FYVE-DSP1= | |FYVE-DSP1= | ||
|ZFYVE10= | |ZFYVE10= | ||
| − | |all_trans=ENSMUST00000109943.9:11 NM_028860 | + | |all_trans=ENSMUST00000109943.9:11 NM_028860:11 BC081544:27 AK141138:33 ENSMUST00000130716.7:-35 NM_001373897:36 BC032166:38 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| Line 13: | Line 13: | ||
|entrez_id=74302 | |entrez_id=74302 | ||
|gc_percent=0.766169 | |gc_percent=0.766169 | ||
| − | |gene_alias=1700092A20Rik | + | |gene_alias=1700092A20Rik{{!}}AI255150{{!}}AW557713{{!}}FYVE-DSP1{{!}}ZFYVE10{{!}}mKIAA0371 |
|gene_description=myotubularin related protein 3 | |gene_description=myotubularin related protein 3 | ||
|gene_id=74302 | |gene_id=74302 | ||
| Line 27: | Line 27: | ||
|nearest_refseq=NM_028860 | |nearest_refseq=NM_028860 | ||
|nearest_unigene=Mm.425669 | |nearest_unigene=Mm.425669 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=4594825 | |start=4594825 | ||
|start_of_center_position=4594826 | |start_of_center_position=4594826 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000109943.9 NM_028860 | + | |transcript_name=ENSMUST00000109943.9 NM_028860 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100766.1 | |tss_id=mm_100766.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B1ATD5 Q80U24 | + | |uniprot_id=B1ATD5 Q80U24 |
}} | }} | ||
Revision as of 16:24, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4594826 |
|---|---|
| End of the center position in the TSS region: | 4594827 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENSMUST00000109943.9 NM_028860 |
|---|---|
| Distance: | 11 |
| Num_trans: | 7 |
| All_trans: | ENSMUST00000109943.9:11 NM_028860:11 BC081544:27 AK141138:33 ENSMUST00000130716.7:-35 NM_001373897:36 BC032166:38 |
TATA-Box annotation
| Distance to TSS: | -12 |
|---|---|
| Nearest PromoterID: | NM_028860 |
| Entrez ID: | 74302 |
| Nearest Unigene: | Mm.425669 |
| Nearest Refseq: | NM_028860 |
| Nearest Ensembl: | ENSMUSG00000034354 |
| Gene Name: | myotubularin related protein 3 |
| Gene Alias: | 1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371 |
| Gene Description: | myotubularin related protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.766169 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
