Difference between revisions of "TSS:Mm 100791.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AK149109:395 EF101556:-485 | + | |all_trans=LF225867:46 MA461444:46 LF225868:-115 MA461445:-115 LF225866:253 MA461443:253 LF225869:-321 MA461446:-321 AK149109:395 EF101556:-485 |
|b2b1660Clo= | |b2b1660Clo= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| − | |distance= | + | |distance=46 |
|distance_to_tss=-7834 | |distance_to_tss=-7834 | ||
|end=4939694 | |end=4939694 | ||
| Line 10: | Line 10: | ||
|entrez_id=11764 | |entrez_id=11764 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=Adtb1 | + | |gene_alias=Adtb1{{!}}b2b1660Clo |
| − | |gene_description= | + | |gene_description=adaptor protein complex AP-1, beta 1 subunit |
|gene_id=380684 | |gene_id=380684 | ||
| − | |gene_name= | + | |gene_name=Ap1b1 |
|gene_source=MGI:97309 | |gene_source=MGI:97309 | ||
|gene_symbol=Nefh | |gene_symbol=Nefh | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_007454 | |nearest_refseq=NM_007454 | ||
|nearest_unigene=Mm.274816 | |nearest_unigene=Mm.274816 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=4939680 | |start=4939680 | ||
|start_of_center_position=4939687 | |start_of_center_position=4939687 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF225867 MA461444 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_100791.1 | |tss_id=mm_100791.1 | ||
Revision as of 16:25, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 4939687 |
|---|---|
| End of the center position in the TSS region: | 4939688 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF225867 MA461444 |
|---|---|
| Distance: | 46 |
| Num_trans: | 10 |
| All_trans: | LF225867:46 MA461444:46 LF225868:-115 MA461445:-115 LF225866:253 MA461443:253 LF225869:-321 MA461446:-321 AK149109:395 EF101556:-485 |
TATA-Box annotation
| Distance to TSS: | -7834 |
|---|---|
| Nearest PromoterID: | NM_001243043 |
| Entrez ID: | 11764 |
| Nearest Unigene: | Mm.274816 |
| Nearest Refseq: | NM_007454 |
| Nearest Ensembl: | ENSMUSG00000009090 |
| Gene Name: | Ap1b1 |
| Gene Alias: | Adtb1|b2b1660Clo |
| Gene Description: | adaptor protein complex AP-1, beta 1 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
