Difference between revisions of "TSS:Mm 10080.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|Mcp= | |Mcp= | ||
| − | |all_trans=ENSMUST00000075451.11:0 ENSMUST00000191775.1:0 | + | |all_trans=ENSMUST00000075451.11:0 ENSMUST00000191775.1:0 NM_001355061:0 NM_001355060:0 NM_013499:0 AK004825:0 M23529:0 ENSMUST00000193719.1:3 AK017702:4 ENSMUST00000192405.1:182 ENSMUST00000193094.5:193 AK134226:194 BC028945:200 ENSMUST00000193829.1:207 BC092048:209 ENSMUST00000194111.5:214 M23446:264 AK160440:421 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 10: | Line 10: | ||
|entrez_id=12946 | |entrez_id=12946 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=Crry | + | |gene_alias=Crry{{!}}Mcp{{!}}mCRY |
|gene_description=complement component (3b/4b) receptor 1-like | |gene_description=complement component (3b/4b) receptor 1-like | ||
|gene_id=12946 | |gene_id=12946 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_013499 | |nearest_refseq=NM_013499 | ||
|nearest_unigene=Mm.301652 | |nearest_unigene=Mm.301652 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=mouse | |species=mouse | ||
|start=195131536 | |start=195131536 | ||
|start_of_center_position=195131562 | |start_of_center_position=195131562 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-53(ATTTTTAAAAGG,-,0.00) |
| − | |transcript_name=ENSMUST00000075451.11 ENSMUST00000191775.1 NM_013499 | + | |transcript_name=ENSMUST00000075451.11 ENSMUST00000191775.1 NM_001355061 NM_001355060 NM_013499 AK004825 M23529 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10080.1 | |tss_id=mm_10080.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A0A6YVT1 Q64735 | + | |uniprot_id=A0A0A6YVT1 Q64735 |
}} | }} | ||
Revision as of 16:25, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 195131562 |
|---|---|
| End of the center position in the TSS region: | 195131563 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000075451.11 ENSMUST00000191775.1 NM_001355061 NM_001355060 NM_013499 AK004825 M23529 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENSMUST00000075451.11:0 ENSMUST00000191775.1:0 NM_001355061:0 NM_001355060:0 NM_013499:0 AK004825:0 M23529:0 ENSMUST00000193719.1:3 AK017702:4 ENSMUST00000192405.1:182 ENSMUST00000193094.5:193 AK134226:194 BC028945:200 ENSMUST00000193829.1:207 BC092048:209 ENSMUST00000194111.5:214 M23446:264 AK160440:421 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_013499 |
| Entrez ID: | 12946 |
| Nearest Unigene: | Mm.301652 |
| Nearest Refseq: | NM_013499 |
| Nearest Ensembl: | ENSMUSG00000016481 |
| Gene Name: | complement component (3b/4b) receptor 1-like |
| Gene Alias: | Crry|Mcp|mCRY |
| Gene Description: | complement component (3b/4b) receptor 1-like |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -53(ATTTTTAAAAGG,-,0.00) |
