Difference between revisions of "TSS:Mm 100800.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.015 |distance= |distance_to_tss=-2025 |end=4984802 |entrez_id=11764 |gc_percent=0.512438 |gene_alias=Adtb1|b2b1660Clo |gene_description="...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |b2b1660Clo= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=-2025 | |distance_to_tss=-2025 | ||
|end=4984802 | |end=4984802 | ||
| + | |end_of_center_position=4984799 | ||
|entrez_id=11764 | |entrez_id=11764 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=Adtb1 | + | |gene_alias=Adtb1{{!}}b2b1660Clo |
| − | |gene_description= | + | |gene_description=adaptor protein complex AP-1, beta 1 subunit |
|gene_name=Ap1b1 | |gene_name=Ap1b1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000009090 | |nearest_ensembl=ENSMUSG00000009090 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001355659 |
|nearest_refseq=NM_007454 | |nearest_refseq=NM_007454 | ||
|nearest_unigene=Mm.274816 | |nearest_unigene=Mm.274816 | ||
| Line 18: | Line 20: | ||
|species=mouse | |species=mouse | ||
|start=4984795 | |start=4984795 | ||
| + | |start_of_center_position=4984798 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-33(CTCCTTATAAAG,-,0.00),-31(CCTTATAAAGGG,+,0.00),-31(CCTTATAAAGGG,-,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 16:25, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 4984798 |
|---|---|
| End of the center position in the TSS region: | 4984799 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -2025 |
|---|---|
| Nearest PromoterID: | NM_001355659 |
| Entrez ID: | 11764 |
| Nearest Unigene: | Mm.274816 |
| Nearest Refseq: | NM_007454 |
| Nearest Ensembl: | ENSMUSG00000009090 |
| Gene Name: | Ap1b1 |
| Gene Alias: | Adtb1|b2b1660Clo |
| Gene Description: | adaptor protein complex AP-1, beta 1 subunit |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -33(CTCCTTATAAAG,-,0.00),-31(CCTTATAAAGGG,+,0.00),-31(CCTTATAAAGGG,-,0.00) |
