Difference between revisions of "TSS:Mm 100813.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000079949.12:-24 ENSMUST00000063232.6:128 | + | |all_trans=ENSMUST00000079949.12:-24 ENSMUST00000063232.6:128 NM_001362620:128 NM_007968:128 NM_001362617:128 NM_001362612:128 NM_001362614:128 NM_001283062:128 NM_001283061:128 NM_001362615:128 NM_001362613:128 NM_001362616:128 NM_001362618:128 NM_001283063:128 AK046434:128 X79233:147 ENSMUST00000073308.10:157 ENSMUST00000151847.1:157 AK049743:157 ENSMUST00000093365.11:158 AK146791:161 AK034755:163 AK151625:165 BC068226:169 AK147103:170 AK153276:179 AK147909:179 AK150345:181 ENSMUST00000102930.9:182 AK019460:187 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:99960 | |hgnc_mgi_id=MGI:99960 | ||
|nearest_ensembl=ENSMUSG00000034175 | |nearest_ensembl=ENSMUSG00000034175 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_177370 |
|nearest_refseq=NM_177370 | |nearest_refseq=NM_177370 | ||
|nearest_unigene=Mm.260866 | |nearest_unigene=Mm.260866 | ||
| − | |num_trans= | + | |num_trans=30 |
|species=mouse | |species=mouse | ||
|start=5099223 | |start=5099223 | ||
Revision as of 16:26, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5099232 |
|---|---|
| End of the center position in the TSS region: | 5099233 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000079949.12 |
|---|---|
| Distance: | -24 |
| Num_trans: | 30 |
| All_trans: | ENSMUST00000079949.12:-24 ENSMUST00000063232.6:128 NM_001362620:128 NM_007968:128 NM_001362617:128 NM_001362612:128 NM_001362614:128 NM_001283062:128 NM_001283061:128 NM_001362615:128 NM_001362613:128 NM_001362616:128 NM_001362618:128 NM_001283063:128 AK046434:128 X79233:147 ENSMUST00000073308.10:157 ENSMUST00000151847.1:157 AK049743:157 ENSMUST00000093365.11:158 AK146791:161 AK034755:163 AK151625:165 BC068226:169 AK147103:170 AK153276:179 AK147909:179 AK150345:181 ENSMUST00000102930.9:182 AK019460:187 |
TATA-Box annotation
| Distance to TSS: | -40 |
|---|---|
| Nearest PromoterID: | NM_177370 |
| Entrez ID: | 279766 |
| Nearest Unigene: | Mm.260866 |
| Nearest Refseq: | NM_177370 |
| Nearest Ensembl: | ENSMUSG00000034175 |
| Gene Name: | Ewing sarcoma breakpoint region 1 |
| Gene Alias: | Ptag |
| Gene Description: | rhomboid domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
