Difference between revisions of "TSS:Mm 100814.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000079949.12:58 ENSMUST00000063232.6:228 | + | |all_trans=ENSMUST00000079949.12:58 ENSMUST00000063232.6:228 NM_001362620:228 NM_007968:228 NM_001362617:228 NM_001362612:228 NM_001362614:228 NM_001283062:228 NM_001283061:228 NM_001362615:228 NM_001362613:228 NM_001362616:228 NM_001362618:228 NM_001283063:228 AK046434:228 X79233:247 ENSMUST00000073308.10:257 ENSMUST00000151847.1:257 AK049743:257 ENSMUST00000093365.11:258 AK146791:261 AK034755:263 AK151625:265 BC068226:269 AK147103:270 AK153276:279 AK147909:279 AK150345:281 ENSMUST00000102930.9:282 AK019460:287 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:99960 | |hgnc_mgi_id=MGI:99960 | ||
|nearest_ensembl=ENSMUSG00000034175 | |nearest_ensembl=ENSMUSG00000034175 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001290492 |
|nearest_refseq=NM_177370 | |nearest_refseq=NM_177370 | ||
|nearest_unigene=Mm.260866 | |nearest_unigene=Mm.260866 | ||
| − | |num_trans= | + | |num_trans=30 |
|species=mouse | |species=mouse | ||
|start=5099323 | |start=5099323 | ||
Revision as of 16:26, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5099339 |
|---|---|
| End of the center position in the TSS region: | 5099340 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000079949.12 |
|---|---|
| Distance: | 58 |
| Num_trans: | 30 |
| All_trans: | ENSMUST00000079949.12:58 ENSMUST00000063232.6:228 NM_001362620:228 NM_007968:228 NM_001362617:228 NM_001362612:228 NM_001362614:228 NM_001283062:228 NM_001283061:228 NM_001362615:228 NM_001362613:228 NM_001362616:228 NM_001362618:228 NM_001283063:228 AK046434:228 X79233:247 ENSMUST00000073308.10:257 ENSMUST00000151847.1:257 AK049743:257 ENSMUST00000093365.11:258 AK146791:261 AK034755:263 AK151625:265 BC068226:269 AK147103:270 AK153276:279 AK147909:279 AK150345:281 ENSMUST00000102930.9:282 AK019460:287 |
TATA-Box annotation
| Distance to TSS: | 67 |
|---|---|
| Nearest PromoterID: | NM_001290492 |
| Entrez ID: | 279766 |
| Nearest Unigene: | Mm.260866 |
| Nearest Refseq: | NM_177370 |
| Nearest Ensembl: | ENSMUSG00000034175 |
| Gene Name: | Ewing sarcoma breakpoint region 1 |
| Gene Alias: | Ptag |
| Gene Description: | rhomboid domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
