Difference between revisions of "TSS:Mm 100818.1"
From referenceTSS
| Line 2: | Line 2: | ||
|CO-5= | |CO-5= | ||
|Emu1= | |Emu1= | ||
| − | |all_trans=ENSMUST00000062821.12:0 ENSMUST00000163299.7:0 ENSMUST00000156492.1:0 NM_080595:0 | + | |all_trans=ENSMUST00000062821.12:0 ENSMUST00000163299.7:0 ENSMUST00000156492.1:0 NM_080595:0 NR_152138:0 NR_163830:0 NM_001371001:0 NM_001371000:0 NM_001371005:0 NM_001371003:0 NM_001371002:0 AJ416093:0 AK153702:0 BC130023:0 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-15 |
|end=5152272 | |end=5152272 | ||
|end_of_center_position=5152246 | |end_of_center_position=5152246 | ||
|entrez_id=140703 | |entrez_id=140703 | ||
|gc_percent=0.825871 | |gc_percent=0.825871 | ||
| − | |gene_alias=AW122071 | + | |gene_alias=AW122071{{!}}CO-5{{!}}Emu1 |
|gene_description=EMI domain containing 1 | |gene_description=EMI domain containing 1 | ||
|gene_id=140703 | |gene_id=140703 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:2155091 | |hgnc_mgi_id=MGI:2155091 | ||
|nearest_ensembl=ENSMUSG00000034164 | |nearest_ensembl=ENSMUSG00000034164 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_152138 |
|nearest_refseq=NM_080595 | |nearest_refseq=NM_080595 | ||
|nearest_unigene=Mm.840 | |nearest_unigene=Mm.840 | ||
| − | |num_trans= | + | |num_trans=14 |
|species=mouse | |species=mouse | ||
|start=5152218 | |start=5152218 | ||
|start_of_center_position=5152245 | |start_of_center_position=5152245 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000062821.12 ENSMUST00000163299.7 ENSMUST00000156492.1 NM_080595 | + | |transcript_name=ENSMUST00000062821.12 ENSMUST00000163299.7 ENSMUST00000156492.1 NM_080595 NR_152138 NR_163830 NM_001371001 NM_001371000 NM_001371005 NM_001371003 NM_001371002 AJ416093 AK153702 BC130023 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100818.1 | |tss_id=mm_100818.1 | ||
Revision as of 16:26, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5152245 |
|---|---|
| End of the center position in the TSS region: | 5152246 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000062821.12 ENSMUST00000163299.7 ENSMUST00000156492.1 NM_080595 NR_152138 NR_163830 NM_001371001 NM_001371000 NM_001371005 NM_001371003 NM_001371002 AJ416093 AK153702 BC130023 |
|---|---|
| Distance: | 0 |
| Num_trans: | 14 |
| All_trans: | ENSMUST00000062821.12:0 ENSMUST00000163299.7:0 ENSMUST00000156492.1:0 NM_080595:0 NR_152138:0 NR_163830:0 NM_001371001:0 NM_001371000:0 NM_001371005:0 NM_001371003:0 NM_001371002:0 AJ416093:0 AK153702:0 BC130023:0 |
TATA-Box annotation
| Distance to TSS: | -15 |
|---|---|
| Nearest PromoterID: | NR_152138 |
| Entrez ID: | 140703 |
| Nearest Unigene: | Mm.840 |
| Nearest Refseq: | NM_080595 |
| Nearest Ensembl: | ENSMUSG00000034164 |
| Gene Name: | EMI domain containing 1 |
| Gene Alias: | AW122071|CO-5|Emu1 |
| Gene Description: | EMI domain containing 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.825871 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
