Difference between revisions of "TSS:Mm 100822.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Kremen= | |Kremen= | ||
|Krm1= | |Krm1= | ||
| − | |all_trans=NM_032396 | + | |all_trans=NM_032396:0 BC082546:0 AK141321:0 BC138464:0 BC138465:0 AK081707:0 ENSMUST00000020662.14:12 AB059617:12 BC049771:36 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| Line 11: | Line 11: | ||
|entrez_id=84035 | |entrez_id=84035 | ||
|gc_percent=0.860697 | |gc_percent=0.860697 | ||
| − | |gene_alias=AV002070 | + | |gene_alias=AV002070{{!}}Kremen{{!}}Krm1 |
|gene_description=kringle containing transmembrane protein 1 | |gene_description=kringle containing transmembrane protein 1 | ||
|gene_id=84035 | |gene_id=84035 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_032396 | |nearest_refseq=NM_032396 | ||
|nearest_unigene=Mm.209989 | |nearest_unigene=Mm.209989 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=mouse | |species=mouse | ||
|start=5261569 | |start=5261569 | ||
|start_of_center_position=5261603 | |start_of_center_position=5261603 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_032396 | + | |transcript_name=NM_032396 BC082546 AK141321 BC138464 BC138465 AK081707 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100822.1 | |tss_id=mm_100822.1 | ||
Revision as of 16:26, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5261603 |
|---|---|
| End of the center position in the TSS region: | 5261604 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_032396 BC082546 AK141321 BC138464 BC138465 AK081707 |
|---|---|
| Distance: | 0 |
| Num_trans: | 9 |
| All_trans: | NM_032396:0 BC082546:0 AK141321:0 BC138464:0 BC138465:0 AK081707:0 ENSMUST00000020662.14:12 AB059617:12 BC049771:36 |
TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_032396 |
| Entrez ID: | 84035 |
| Nearest Unigene: | Mm.209989 |
| Nearest Refseq: | NM_032396 |
| Nearest Ensembl: | ENSMUSG00000020393 |
| Gene Name: | kringle containing transmembrane protein 1 |
| Gene Alias: | AV002070|Kremen|Krm1 |
| Gene Description: | kringle containing transmembrane protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.860697 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
