Difference between revisions of "TSS:Mm 100834.1"
From referenceTSS
| Line 5: | Line 5: | ||
|AV173073= | |AV173073= | ||
|BC018601= | |BC018601= | ||
| − | |all_trans= | + | |all_trans=AK155948:-23 DQ541770:266 BC034558:-381 BC059888:-398 ENSMUST00000020776.4:-413 BC018601:-413 NM_134033:-443 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 14: | Line 14: | ||
|entrez_id=104479 | |entrez_id=104479 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=1110004K02Rik | + | |gene_alias=1110004K02Rik{{!}}1700026O03Rik{{!}}AU018638{{!}}AU042822{{!}}AV173073{{!}}BC018601 |
|gene_description=coiled-coil domain containing 117 | |gene_description=coiled-coil domain containing 117 | ||
|gene_name=Ccdc117 | |gene_name=Ccdc117 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_134033 | |nearest_refseq=NM_134033 | ||
|nearest_unigene=Mm.210403 | |nearest_unigene=Mm.210403 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=5541768 | |start=5541768 | ||
|start_of_center_position=5541771 | |start_of_center_position=5541771 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AK155948 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100834.1 | |tss_id=mm_100834.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:26, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5541771 |
|---|---|
| End of the center position in the TSS region: | 5541772 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK155948 |
|---|---|
| Distance: | -23 |
| Num_trans: | 7 |
| All_trans: | AK155948:-23 DQ541770:266 BC034558:-381 BC059888:-398 ENSMUST00000020776.4:-413 BC018601:-413 NM_134033:-443 |
TATA-Box annotation
| Distance to TSS: | 446 |
|---|---|
| Nearest PromoterID: | NM_134033 |
| Entrez ID: | 104479 |
| Nearest Unigene: | Mm.210403 |
| Nearest Refseq: | NM_134033 |
| Nearest Ensembl: | ENSMUSG00000020482 |
| Gene Name: | Ccdc117 |
| Gene Alias: | 1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601 |
| Gene Description: | coiled-coil domain containing 117 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
