Difference between revisions of "TSS:Mm 100839.1"
From referenceTSS
| Line 2: | Line 2: | ||
|AI414579= | |AI414579= | ||
|Rpms24= | |Rpms24= | ||
| − | |all_trans=ENSMUST00000154330.1:0 ENSMUST00000020770.10:0 ENSMUST00000132874.1:0 | + | |all_trans=ENSMUST00000154330.1:0 ENSMUST00000020770.10:0 ENSMUST00000132874.1:0 NM_001362871:0 NM_026080:0 AK014099:0 BC029262:0 AK003117:0 AK010590:0 AK012461:0 AK007338:0 ENSMUST00000123697.1:17 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=18 |
|end=5707708 | |end=5707708 | ||
|end_of_center_position=5707684 | |end_of_center_position=5707684 | ||
|entrez_id=64660 | |entrez_id=64660 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
| − | |gene_alias=3110030K20Rik | + | |gene_alias=3110030K20Rik{{!}}AI414579{{!}}MRP-S24{{!}}Rpms24{{!}}S24mt |
|gene_description=mitochondrial ribosomal protein S24 | |gene_description=mitochondrial ribosomal protein S24 | ||
|gene_id=64660 | |gene_id=64660 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:1928142 | |hgnc_mgi_id=MGI:1928142 | ||
|nearest_ensembl=ENSMUSG00000020477 | |nearest_ensembl=ENSMUSG00000020477 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362871 |
|nearest_refseq=NM_026080 | |nearest_refseq=NM_026080 | ||
|nearest_unigene=Mm.7328 | |nearest_unigene=Mm.7328 | ||
| Line 29: | Line 29: | ||
|start_of_center_position=5707683 | |start_of_center_position=5707683 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000154330.1 ENSMUST00000020770.10 ENSMUST00000132874.1 NM_026080 | + | |transcript_name=ENSMUST00000154330.1 ENSMUST00000020770.10 ENSMUST00000132874.1 NM_001362871 NM_026080 AK014099 BC029262 AK003117 AK010590 AK012461 AK007338 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100839.1 | |tss_id=mm_100839.1 | ||
Revision as of 16:26, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 5707683 |
|---|---|
| End of the center position in the TSS region: | 5707684 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000154330.1 ENSMUST00000020770.10 ENSMUST00000132874.1 NM_001362871 NM_026080 AK014099 BC029262 AK003117 AK010590 AK012461 AK007338 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | ENSMUST00000154330.1:0 ENSMUST00000020770.10:0 ENSMUST00000132874.1:0 NM_001362871:0 NM_026080:0 AK014099:0 BC029262:0 AK003117:0 AK010590:0 AK012461:0 AK007338:0 ENSMUST00000123697.1:17 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_001362871 |
| Entrez ID: | 64660 |
| Nearest Unigene: | Mm.7328 |
| Nearest Refseq: | NM_026080 |
| Nearest Ensembl: | ENSMUSG00000020477 |
| Gene Name: | mitochondrial ribosomal protein S24 |
| Gene Alias: | 3110030K20Rik|AI414579|MRP-S24|Rpms24|S24mt |
| Gene Description: | mitochondrial ribosomal protein S24 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
