Difference between revisions of "TSS:Mm 100844.1"
From referenceTSS
| Line 2: | Line 2: | ||
|2210015D19Rik= | |2210015D19Rik= | ||
|AI596465= | |AI596465= | ||
| − | |all_trans=AK129378:-36 AK191392:76 BC066994:-204 ENSMUST00000120306.7:-318 AK035580:-318 ENSMUST00000170116.7:-323 ENSMUST00000053427.10:-323 ENSMUST00000118076.7:-323 | + | |all_trans=AK129378:-36 AK191392:76 BC066994:-204 ENSMUST00000120306.7:-318 AK035580:-318 ENSMUST00000170116.7:-323 ENSMUST00000053427.10:-323 ENSMUST00000118076.7:-323 NM_001361588:-323 NM_001361589:-323 NM_001077661:-323 NM_001361592:-323 AK041953:-323 AK037923:-337 AK053862:-345 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| Line 11: | Line 11: | ||
|entrez_id=76508 | |entrez_id=76508 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
| − | |gene_alias=1600028I17Rik | + | |gene_alias=1600028I17Rik{{!}}2210015D19Rik{{!}}AI596465 |
| − | |gene_description= | + | |gene_description=ubiquitin-conjugating enzyme E2D, pseudogene |
|gene_id=72046 | |gene_id=72046 | ||
|gene_name=upregulator of cell proliferation | |gene_name=upregulator of cell proliferation | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NR_015577 | |nearest_refseq=NR_015577 | ||
|nearest_unigene=Mm.260203 | |nearest_unigene=Mm.260203 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=mouse | |species=mouse | ||
|start=5762044 | |start=5762044 | ||
| Line 33: | Line 33: | ||
|tss_id=mm_100844.1 | |tss_id=mm_100844.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=Q6ZPP3 |
}} | }} | ||
Revision as of 16:26, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 5762048 |
|---|---|
| End of the center position in the TSS region: | 5762049 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK129378 |
|---|---|
| Distance: | -36 |
| Num_trans: | 15 |
| All_trans: | AK129378:-36 AK191392:76 BC066994:-204 ENSMUST00000120306.7:-318 AK035580:-318 ENSMUST00000170116.7:-323 ENSMUST00000053427.10:-323 ENSMUST00000118076.7:-323 NM_001361588:-323 NM_001361589:-323 NM_001077661:-323 NM_001361592:-323 AK041953:-323 AK037923:-337 AK053862:-345 |
TATA-Box annotation
| Distance to TSS: | -101 |
|---|---|
| Nearest PromoterID: | NR_015577 |
| Entrez ID: | 76508 |
| Nearest Unigene: | Mm.260203 |
| Nearest Refseq: | NR_015577 |
| Nearest Ensembl: | ENSMUSG00000083844 |
| Gene Name: | upregulator of cell proliferation |
| Gene Alias: | 1600028I17Rik|2210015D19Rik|AI596465 |
| Gene Description: | ubiquitin-conjugating enzyme E2D, pseudogene |
| Gene Type: | ncRNA |
| CpG%: | 0.115 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
