Difference between revisions of "TSS:Mm 100856.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=LF225988:229 MA461565:229 LF225990:-421 MA461567:-421 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| − | |distance= | + | |distance=229 |
|distance_to_tss=432 | |distance_to_tss=432 | ||
|end=5862301 | |end=5862301 | ||
| Line 13: | Line 14: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSMUSG00000020473 | |nearest_ensembl=ENSMUSG00000020473 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_009636 |
|nearest_refseq=NM_009636 | |nearest_refseq=NM_009636 | ||
|nearest_unigene=Mm.3317 | |nearest_unigene=Mm.3317 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=5862294 | |start=5862294 | ||
|start_of_center_position=5862297 | |start_of_center_position=5862297 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF225988 MA461565 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100856.1 | |tss_id=mm_100856.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:27, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 5862297 |
|---|---|
| End of the center position in the TSS region: | 5862298 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | LF225988 MA461565 |
|---|---|
| Distance: | 229 |
| Num_trans: | 4 |
| All_trans: | LF225988:229 MA461565:229 LF225990:-421 MA461567:-421 |
TATA-Box annotation
| Distance to TSS: | 432 |
|---|---|
| Nearest PromoterID: | NM_009636 |
| Entrez ID: | 11568 |
| Nearest Unigene: | Mm.3317 |
| Nearest Refseq: | NM_009636 |
| Nearest Ensembl: | ENSMUSG00000020473 |
| Gene Name: | Aebp1 |
| Gene Alias: | ACLP |
| Gene Description: | AE binding protein 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
