Difference between revisions of "TSS:Mm 10086.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|AA409679= | |AA409679= | ||
| − | |all_trans=ENSMUST00000115099.8:0 | + | |all_trans=ENSMUST00000115099.8:0 NM_001361386:0 NM_001081161:0 ENSMUST00000091505.10:21 AK032237:21 BC138175:77 BC145171:77 ENSMUST00000062934.6:293 NM_001347067:293 AK077831:293 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-18 |
|end=3118392 | |end=3118392 | ||
|end_of_center_position=3118364 | |end_of_center_position=3118364 | ||
|entrez_id=269233 | |entrez_id=269233 | ||
|gc_percent=0.830846 | |gc_percent=0.830846 | ||
| − | |gene_alias=9630050M13Rik | + | |gene_alias=9630050M13Rik{{!}}AA409679 |
| − | |gene_description= | + | |gene_description=family with sequence similarity 171, member A1 |
|gene_id=269233 | |gene_id=269233 | ||
| − | |gene_name= | + | |gene_name=family with sequence similarity 171, member A1 |
|gene_source=MGI:2442917 | |gene_source=MGI:2442917 | ||
|gene_symbol=Fam171a1 | |gene_symbol=Fam171a1 | ||
| Line 28: | Line 28: | ||
|start_of_center_position=3118363 | |start_of_center_position=3118363 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000115099.8 NM_001081161 | + | |transcript_name=ENSMUST00000115099.8 NM_001361386 NM_001081161 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_10086.1 | |tss_id=mm_10086.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A2ATK9 | + | |uniprot_id=A2ATK9 |
}} | }} | ||
Revision as of 16:27, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3118363 |
|---|---|
| End of the center position in the TSS region: | 3118364 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000115099.8 NM_001361386 NM_001081161 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10 |
| All_trans: | ENSMUST00000115099.8:0 NM_001361386:0 NM_001081161:0 ENSMUST00000091505.10:21 AK032237:21 BC138175:77 BC145171:77 ENSMUST00000062934.6:293 NM_001347067:293 AK077831:293 |
TATA-Box annotation
| Distance to TSS: | -18 |
|---|---|
| Nearest PromoterID: | NM_001081161 |
| Entrez ID: | 269233 |
| Nearest Unigene: | Mm.23044 |
| Nearest Refseq: | NM_001081161 |
| Nearest Ensembl: | ENSMUSG00000050530 |
| Gene Name: | family with sequence similarity 171, member A1 |
| Gene Alias: | 9630050M13Rik|AA409679 |
| Gene Description: | family with sequence similarity 171, member A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
