Difference between revisions of "TSS:Mm 10088.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|AA409679= | |AA409679= | ||
| − | |all_trans=BC138175:-55 BC145171:-55 ENSMUST00000091505.10:-111 AK032237:-111 | + | |all_trans=BC138175:-55 BC145171:-55 ENSMUST00000091505.10:-111 AK032237:-111 ENSMUST00000115099.8:-142 NM_001361386:-142 NM_001081161:-142 ENSMUST00000062934.6:143 NM_001347067:143 AK077831:143 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
|distance=-55 | |distance=-55 | ||
| − | |distance_to_tss= | + | |distance_to_tss=151 |
|end=3118542 | |end=3118542 | ||
|end_of_center_position=3118533 | |end_of_center_position=3118533 | ||
|entrez_id=269233 | |entrez_id=269233 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=9630050M13Rik | + | |gene_alias=9630050M13Rik{{!}}AA409679 |
| − | |gene_description= | + | |gene_description=family with sequence similarity 171, member A1 |
|gene_id=269233 | |gene_id=269233 | ||
| − | |gene_name= | + | |gene_name=family with sequence similarity 171, member A1 |
|gene_source=MGI:2442917 | |gene_source=MGI:2442917 | ||
|gene_symbol=Fam171a1 | |gene_symbol=Fam171a1 | ||
| Line 20: | Line 20: | ||
|hgnc_mgi_id=MGI:2442917 | |hgnc_mgi_id=MGI:2442917 | ||
|nearest_ensembl=ENSMUSG00000050530 | |nearest_ensembl=ENSMUSG00000050530 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001361386 |
|nearest_refseq=NM_001081161 | |nearest_refseq=NM_001081161 | ||
|nearest_unigene=Mm.23044 | |nearest_unigene=Mm.23044 | ||
Revision as of 16:27, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3118532 |
|---|---|
| End of the center position in the TSS region: | 3118533 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC138175 BC145171 |
|---|---|
| Distance: | -55 |
| Num_trans: | 10 |
| All_trans: | BC138175:-55 BC145171:-55 ENSMUST00000091505.10:-111 AK032237:-111 ENSMUST00000115099.8:-142 NM_001361386:-142 NM_001081161:-142 ENSMUST00000062934.6:143 NM_001347067:143 AK077831:143 |
TATA-Box annotation
| Distance to TSS: | 151 |
|---|---|
| Nearest PromoterID: | NM_001361386 |
| Entrez ID: | 269233 |
| Nearest Unigene: | Mm.23044 |
| Nearest Refseq: | NM_001081161 |
| Nearest Ensembl: | ENSMUSG00000050530 |
| Gene Name: | family with sequence similarity 171, member A1 |
| Gene Alias: | 9630050M13Rik|AA409679 |
| Gene Description: | family with sequence similarity 171, member A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
