Difference between revisions of "TSS:Mm 100890.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000129098.1:14 AK048845:14 ENSMUST00000002817.11:-54 ENSMUST00000109813.8:-60 ENSMUST00000090443.9:-60 ENSMUST00000019133.10:60 NM_007595 | + | |all_trans=ENSMUST00000129098.1:14 AK048845:14 ENSMUST00000002817.11:-54 ENSMUST00000109813.8:-60 ENSMUST00000090443.9:-60 ENSMUST00000019133.10:60 NM_007595:-60 NM_001174053:-60 NM_001174054:-60 AK046454:-60 ENSMUST00000093355.11:90 ENSMUST00000101586.2:102 AK163698:108 ENSMUST00000109815.8:109 ENSMUST00000109812.8:109 X63615:109 BC024803:109 BC080273:122 ENSMUST00000066431.13:127 ENSMUST00000101585.9:134 ENSMUST00000154197.7:134 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.21 | |cpg_percent=0.21 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.830846 | |gc_percent=0.830846 | ||
|gene_alias=CaMKII | |gene_alias=CaMKII | ||
| − | |gene_description= | + | |gene_description=calcium/calmodulin-dependent protein kinase II, beta |
|gene_id=12323 | |gene_id=12323 | ||
| − | |gene_name= | + | |gene_name=calcium/calmodulin-dependent protein kinase II, beta |
|gene_source=MGI:88257 | |gene_source=MGI:88257 | ||
|gene_symbol=Camk2b | |gene_symbol=Camk2b | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:88257 | |hgnc_mgi_id=MGI:88257 | ||
|nearest_ensembl=ENSMUSG00000057897 | |nearest_ensembl=ENSMUSG00000057897 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_007595 |
|nearest_refseq=NM_007595 | |nearest_refseq=NM_007595 | ||
|nearest_unigene=Mm.439733 | |nearest_unigene=Mm.439733 | ||
| − | |num_trans= | + | |num_trans=21 |
|species=mouse | |species=mouse | ||
|start=6065671 | |start=6065671 | ||
Revision as of 16:27, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6065679 |
|---|---|
| End of the center position in the TSS region: | 6065680 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000129098.1 AK048845 |
|---|---|
| Distance: | 14 |
| Num_trans: | 21 |
| All_trans: | ENSMUST00000129098.1:14 AK048845:14 ENSMUST00000002817.11:-54 ENSMUST00000109813.8:-60 ENSMUST00000090443.9:-60 ENSMUST00000019133.10:60 NM_007595:-60 NM_001174053:-60 NM_001174054:-60 AK046454:-60 ENSMUST00000093355.11:90 ENSMUST00000101586.2:102 AK163698:108 ENSMUST00000109815.8:109 ENSMUST00000109812.8:109 X63615:109 BC024803:109 BC080273:122 ENSMUST00000066431.13:127 ENSMUST00000101585.9:134 ENSMUST00000154197.7:134 |
TATA-Box annotation
| Distance to TSS: | 68 |
|---|---|
| Nearest PromoterID: | NM_007595 |
| Entrez ID: | 12323 |
| Nearest Unigene: | Mm.439733 |
| Nearest Refseq: | NM_007595 |
| Nearest Ensembl: | ENSMUSG00000057897 |
| Gene Name: | calcium/calmodulin-dependent protein kinase II, beta |
| Gene Alias: | CaMKII |
| Gene Description: | calcium/calmodulin-dependent protein kinase II, beta |
| Gene Type: | protein-coding |
| CpG%: | 0.21 |
| GC%: | 0.830846 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
