Difference between revisions of "TSS:Mm 100894.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000109813.8:143 ENSMUST00000090443.9:143 NM_007595 | + | |all_trans=ENSMUST00000109813.8:143 ENSMUST00000090443.9:143 NM_007595:143 NM_001174053:143 NM_001174054:143 AK046454:143 ENSMUST00000002817.11:149 ENSMUST00000129098.1:233 AK048845:233 ENSMUST00000019133.10:279 ENSMUST00000093355.11:309 ENSMUST00000101586.2:321 AK163698:327 ENSMUST00000109815.8:328 ENSMUST00000109812.8:328 X63615:328 BC024803:328 BC080273:341 ENSMUST00000066431.13:346 ENSMUST00000101585.9:353 ENSMUST00000154197.7:353 ENSMUST00000123391.7:-451 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.155 | |cpg_percent=0.155 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
|gene_alias=CaMKII | |gene_alias=CaMKII | ||
| − | |gene_description= | + | |gene_description=calcium/calmodulin-dependent protein kinase II, beta |
|gene_id=12323 | |gene_id=12323 | ||
| − | |gene_name= | + | |gene_name=calcium/calmodulin-dependent protein kinase II, beta |
|gene_source=MGI:88257 | |gene_source=MGI:88257 | ||
|gene_symbol=Camk2b | |gene_symbol=Camk2b | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:88257 | |hgnc_mgi_id=MGI:88257 | ||
|nearest_ensembl=ENSMUSG00000057897 | |nearest_ensembl=ENSMUSG00000057897 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001174053 |
|nearest_refseq=NM_007595 | |nearest_refseq=NM_007595 | ||
|nearest_unigene=Mm.439733 | |nearest_unigene=Mm.439733 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=mouse | |species=mouse | ||
|start=6065890 | |start=6065890 | ||
|start_of_center_position=6065900 | |start_of_center_position=6065900 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000109813.8 ENSMUST00000090443.9 NM_007595 NM_001174054 | + | |transcript_name=ENSMUST00000109813.8 ENSMUST00000090443.9 NM_007595 NM_001174053 NM_001174054 AK046454 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100894.1 | |tss_id=mm_100894.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P28652 | + | |uniprot_id=P28652 Q68EG2 Q8BL41 |
}} | }} | ||
Revision as of 16:27, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6065900 |
|---|---|
| End of the center position in the TSS region: | 6065901 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000109813.8 ENSMUST00000090443.9 NM_007595 NM_001174053 NM_001174054 AK046454 |
|---|---|
| Distance: | 143 |
| Num_trans: | 22 |
| All_trans: | ENSMUST00000109813.8:143 ENSMUST00000090443.9:143 NM_007595:143 NM_001174053:143 NM_001174054:143 AK046454:143 ENSMUST00000002817.11:149 ENSMUST00000129098.1:233 AK048845:233 ENSMUST00000019133.10:279 ENSMUST00000093355.11:309 ENSMUST00000101586.2:321 AK163698:327 ENSMUST00000109815.8:328 ENSMUST00000109812.8:328 X63615:328 BC024803:328 BC080273:341 ENSMUST00000066431.13:346 ENSMUST00000101585.9:353 ENSMUST00000154197.7:353 ENSMUST00000123391.7:-451 |
TATA-Box annotation
| Distance to TSS: | -153 |
|---|---|
| Nearest PromoterID: | NM_001174053 |
| Entrez ID: | 12323 |
| Nearest Unigene: | Mm.439733 |
| Nearest Refseq: | NM_007595 |
| Nearest Ensembl: | ENSMUSG00000057897 |
| Gene Name: | calcium/calmodulin-dependent protein kinase II, beta |
| Gene Alias: | CaMKII |
| Gene Description: | calcium/calmodulin-dependent protein kinase II, beta |
| Gene Type: | protein-coding |
| CpG%: | 0.155 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
