Difference between revisions of "TSS:Mm 100896.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000123391.7:-225 ENSMUST00000109813.8:374 ENSMUST00000090443.9:374 NM_007595 | + | |all_trans=ENSMUST00000123391.7:-225 ENSMUST00000109813.8:374 ENSMUST00000090443.9:374 NM_007595:374 NM_001174053:374 NM_001174054:374 AK046454:374 ENSMUST00000002817.11:380 ENSMUST00000129098.1:464 AK048845:464 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
|gene_alias=CaMKII | |gene_alias=CaMKII | ||
| − | |gene_description= | + | |gene_description=calcium/calmodulin-dependent protein kinase II, beta |
|gene_id=12323 | |gene_id=12323 | ||
| − | |gene_name= | + | |gene_name=calcium/calmodulin-dependent protein kinase II, beta |
|gene_source=MGI:88257 | |gene_source=MGI:88257 | ||
|gene_symbol=Camk2b | |gene_symbol=Camk2b | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=MGI:88257 | |hgnc_mgi_id=MGI:88257 | ||
|nearest_ensembl=ENSMUSG00000057897 | |nearest_ensembl=ENSMUSG00000057897 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001174053 |
|nearest_refseq=NM_007595 | |nearest_refseq=NM_007595 | ||
|nearest_unigene=Mm.439733 | |nearest_unigene=Mm.439733 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=6066121 | |start=6066121 | ||
|start_of_center_position=6066129 | |start_of_center_position=6066129 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-27(GCCTTTAGGGGA,+,0.00) |
|transcript_name=ENSMUST00000123391.7 | |transcript_name=ENSMUST00000123391.7 | ||
|tss_classification=yes | |tss_classification=yes | ||
Revision as of 16:28, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6066129 |
|---|---|
| End of the center position in the TSS region: | 6066130 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000123391.7 |
|---|---|
| Distance: | -225 |
| Num_trans: | 10 |
| All_trans: | ENSMUST00000123391.7:-225 ENSMUST00000109813.8:374 ENSMUST00000090443.9:374 NM_007595:374 NM_001174053:374 NM_001174054:374 AK046454:374 ENSMUST00000002817.11:380 ENSMUST00000129098.1:464 AK048845:464 |
TATA-Box annotation
| Distance to TSS: | -381 |
|---|---|
| Nearest PromoterID: | NM_001174053 |
| Entrez ID: | 12323 |
| Nearest Unigene: | Mm.439733 |
| Nearest Refseq: | NM_007595 |
| Nearest Ensembl: | ENSMUSG00000057897 |
| Gene Name: | calcium/calmodulin-dependent protein kinase II, beta |
| Gene Alias: | CaMKII |
| Gene Description: | calcium/calmodulin-dependent protein kinase II, beta |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -27(GCCTTTAGGGGA,+,0.00) |
