Difference between revisions of "TSS:Mm 100900.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.005 |distance= |distance_to_tss=13458 |end=6159885 |entrez_id=100042173 |gc_percent=0.457711 |gene_alias=Gm11968|OTTMUSG00000005107 |gene...") |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |OTTMUSG00000005107= | ||
| + | |all_trans=LF226080:426 MA461657:426 | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=426 |
|distance_to_tss=13458 | |distance_to_tss=13458 | ||
|end=6159885 | |end=6159885 | ||
| + | |end_of_center_position=6159874 | ||
|entrez_id=100042173 | |entrez_id=100042173 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| − | |gene_alias=Gm11968 | + | |gene_alias=Gm11968 |
| − | |gene_description= | + | |gene_description=ribosomal protein S15A, pseudogene 6 |
|gene_name=Rps15a-ps6 | |gene_name=Rps15a-ps6 | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| Line 15: | Line 18: | ||
|nearest_refseq=NR_029471 | |nearest_refseq=NR_029471 | ||
|nearest_unigene=Mm.441799 | |nearest_unigene=Mm.441799 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=6159861 | |start=6159861 | ||
| + | |start_of_center_position=6159873 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF226080 MA461657 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_100900.1 | |tss_id=mm_100900.1 | ||
|tss_score=1 | |tss_score=1 | ||
}} | }} | ||
Latest revision as of 16:28, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6159873 |
|---|---|
| End of the center position in the TSS region: | 6159874 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF226080 MA461657 |
|---|---|
| Distance: | 426 |
| Num_trans: | 2 |
| All_trans: | LF226080:426 MA461657:426 |
TATA-Box annotation
| Distance to TSS: | 13458 |
|---|---|
| Nearest PromoterID: | NR_029471 |
| Entrez ID: | 100042173 |
| Nearest Unigene: | Mm.441799 |
| Nearest Refseq: | NR_029471 |
| Nearest Ensembl: | |
| Gene Name: | Rps15a-ps6 |
| Gene Alias: | Gm11968 |
| Gene Description: | ribosomal protein S15A, pseudogene 6 |
| Gene Type: | pseudo |
| CpG%: | 0.005 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
