Difference between revisions of "TSS:Mm 100904.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|BC024322= | |BC024322= | ||
| − | |all_trans=ENSMUST00000066496.9:0 NM_173748:-5 | + | |all_trans=ENSMUST00000066496.9:0 NM_173748:-5 NM_001363446:-5 AK169797:226 AK170329:229 AK159391:230 AK159458:230 AK030050:237 AK046219:240 BC024322:243 AK171224:247 AK049739:250 AK036694:258 EU350933:270 AK050476:272 BC037090:273 AK215033:334 BC052089:400 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 10: | Line 10: | ||
|entrez_id=209586 | |entrez_id=209586 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
| − | |gene_alias=AI427847 | + | |gene_alias=AI427847{{!}}BC024322{{!}}mKIAA1068 |
|gene_description=NudC domain containing 3 | |gene_description=NudC domain containing 3 | ||
|gene_id=209586 | |gene_id=209586 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_173748 | |nearest_refseq=NM_173748 | ||
|nearest_unigene=Mm.25321 | |nearest_unigene=Mm.25321 | ||
| − | |num_trans= | + | |num_trans=18 |
|species=mouse | |species=mouse | ||
|start=6200411 | |start=6200411 | ||
Revision as of 16:28, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6200428 |
|---|---|
| End of the center position in the TSS region: | 6200429 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000066496.9 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENSMUST00000066496.9:0 NM_173748:-5 NM_001363446:-5 AK169797:226 AK170329:229 AK159391:230 AK159458:230 AK030050:237 AK046219:240 BC024322:243 AK171224:247 AK049739:250 AK036694:258 EU350933:270 AK050476:272 BC037090:273 AK215033:334 BC052089:400 |
TATA-Box annotation
| Distance to TSS: | 22 |
|---|---|
| Nearest PromoterID: | NM_173748 |
| Entrez ID: | 209586 |
| Nearest Unigene: | Mm.25321 |
| Nearest Refseq: | NM_173748 |
| Nearest Ensembl: | ENSMUSG00000053838 |
| Gene Name: | NudC domain containing 3 |
| Gene Alias: | AI427847|BC024322|mKIAA1068 |
| Gene Description: | NudC domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
