Difference between revisions of "TSS:Mm 100913.1"
From referenceTSS
| Line 2: | Line 2: | ||
|D11Ertd619e= | |D11Ertd619e= | ||
|Noh61= | |Noh61= | ||
| − | |all_trans=ENSMUST00000155874.1:0 NM_026538 | + | |all_trans=ENSMUST00000155874.1:0 NM_026538:0 AK076975:0 AK011136:0 AK076047:0 BC018291:0 AK077514:0 AK159793:0 AK169654:0 AK171962:0 AK145628:-15 ENSMUST00000004507.10:-17 ENSMUST00000151446.1:-17 AK191115:171 AK188357:253 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| Line 11: | Line 11: | ||
|entrez_id=52513 | |entrez_id=52513 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=2600001H07Rik | + | |gene_alias=2600001H07Rik{{!}}D11Ertd619e{{!}}Noh61 |
|gene_description=DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 | |gene_description=DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 | ||
|gene_id=52513 | |gene_id=52513 | ||
| − | |gene_name=DEAD | + | |gene_name=DEAD box helicase 56 |
|gene_source=MGI:1277172 | |gene_source=MGI:1277172 | ||
|gene_symbol=Ddx56 | |gene_symbol=Ddx56 | ||
| − | |gene_synonyms=2600001H07Rik D11Ertd619e NOH61 | + | |gene_synonyms=2600001H07Rik D11Ertd619e DEAD_(Asp-Glu-Ala-Asp)_box_polypeptide_56 NOH61 |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1277172 | |hgnc_mgi_id=MGI:1277172 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_026538 | |nearest_refseq=NM_026538 | ||
|nearest_unigene=Mm.29810 | |nearest_unigene=Mm.29810 | ||
| − | |num_trans= | + | |num_trans=15 |
|species=mouse | |species=mouse | ||
|start=6267718 | |start=6267718 | ||
|start_of_center_position=6267736 | |start_of_center_position=6267736 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000155874.1 NM_026538 | + | |transcript_name=ENSMUST00000155874.1 NM_026538 AK076975 AK011136 AK076047 BC018291 AK077514 AK159793 AK169654 AK171962 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100913.1 | |tss_id=mm_100913.1 | ||
Revision as of 16:28, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6267736 |
|---|---|
| End of the center position in the TSS region: | 6267737 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000155874.1 NM_026538 AK076975 AK011136 AK076047 BC018291 AK077514 AK159793 AK169654 AK171962 |
|---|---|
| Distance: | 0 |
| Num_trans: | 15 |
| All_trans: | ENSMUST00000155874.1:0 NM_026538:0 AK076975:0 AK011136:0 AK076047:0 BC018291:0 AK077514:0 AK159793:0 AK169654:0 AK171962:0 AK145628:-15 ENSMUST00000004507.10:-17 ENSMUST00000151446.1:-17 AK191115:171 AK188357:253 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_026538 |
| Entrez ID: | 52513 |
| Nearest Unigene: | Mm.29810 |
| Nearest Refseq: | NM_026538 |
| Nearest Ensembl: | ENSMUSG00000004393 |
| Gene Name: | DEAD box helicase 56 |
| Gene Alias: | 2600001H07Rik|D11Ertd619e|Noh61 |
| Gene Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
