Difference between revisions of "TSS:Mm 100916.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|AI326346= | |AI326346= | ||
| − | |all_trans=NM_134020 | + | |all_trans=NM_134020:-8 BC023041:-8 AK182125:8 AK078425:-18 AF368921:-30 ENSMUST00000132147.2:-36 AK158876:-40 ENSMUST00000004508.12:-41 ENSMUST00000130621.1:-41 AK186607:383 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| Line 10: | Line 10: | ||
|entrez_id=103694 | |entrez_id=103694 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=1110014L17Rik | + | |gene_alias=1110014L17Rik{{!}}AI326346 |
|gene_description=transmembrane p24 trafficking protein 4 | |gene_description=transmembrane p24 trafficking protein 4 | ||
|gene_id=103694 | |gene_id=103694 | ||
| − | |gene_name=transmembrane | + | |gene_name=transmembrane p24 trafficking protein 4 |
|gene_source=MGI:1915070 | |gene_source=MGI:1915070 | ||
|gene_symbol=Tmed4 | |gene_symbol=Tmed4 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_134020 | |nearest_refseq=NM_134020 | ||
|nearest_unigene=Mm.254495 | |nearest_unigene=Mm.254495 | ||
| − | |num_trans= | + | |num_trans=10 |
|species=mouse | |species=mouse | ||
|start=6274818 | |start=6274818 | ||
|start_of_center_position=6274823 | |start_of_center_position=6274823 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_134020 | + | |transcript_name=NM_134020 BC023041 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100916.1 | |tss_id=mm_100916.1 | ||
Revision as of 16:28, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6274823 |
|---|---|
| End of the center position in the TSS region: | 6274824 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_134020 BC023041 |
|---|---|
| Distance: | -8 |
| Num_trans: | 10 |
| All_trans: | NM_134020:-8 BC023041:-8 AK182125:8 AK078425:-18 AF368921:-30 ENSMUST00000132147.2:-36 AK158876:-40 ENSMUST00000004508.12:-41 ENSMUST00000130621.1:-41 AK186607:383 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_134020 |
| Entrez ID: | 103694 |
| Nearest Unigene: | Mm.254495 |
| Nearest Refseq: | NM_134020 |
| Nearest Ensembl: | ENSMUSG00000004394 |
| Gene Name: | transmembrane p24 trafficking protein 4 |
| Gene Alias: | 1110014L17Rik|AI326346 |
| Gene Description: | transmembrane p24 trafficking protein 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
