Difference between revisions of "TSS:Mm 100919.1"
From referenceTSS
| Line 2: | Line 2: | ||
|2210412K19Rik= | |2210412K19Rik= | ||
|AA409584= | |AA409584= | ||
| − | |all_trans=AK085849:310 | + | |all_trans=NR_168687:-96 AK085849:310 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|d1401= | |d1401= | ||
| − | |distance= | + | |distance=-96 |
| − | |distance_to_tss=- | + | |distance_to_tss=-9 |
|end=6292167 | |end=6292167 | ||
|end_of_center_position=6292161 | |end_of_center_position=6292161 | ||
|entrez_id=18293 | |entrez_id=18293 | ||
|gc_percent=0.661692 | |gc_percent=0.661692 | ||
| − | |gene_alias=2210403E04Rik | + | |gene_alias=2210403E04Rik{{!}}2210412K19Rik{{!}}AA409584{{!}}d1401{{!}}mKIAA4192 |
|gene_description=oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) | |gene_description=oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) | ||
| − | |gene_name= | + | |gene_id=108167883 |
| + | |gene_name=predicted gene, 46270 | ||
| + | |gene_source=MGI:5825907 | ||
| + | |gene_symbol=Gm46270 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=MGI:5825907 | ||
|mKIAA4192= | |mKIAA4192= | ||
|nearest_ensembl=ENSMUSG00000020456 | |nearest_ensembl=ENSMUSG00000020456 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001361904 |
|nearest_refseq=NM_010956 | |nearest_refseq=NM_010956 | ||
|nearest_unigene=Mm.276348 | |nearest_unigene=Mm.276348 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=mouse | |species=mouse | ||
|start=6292154 | |start=6292154 | ||
|start_of_center_position=6292160 | |start_of_center_position=6292160 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NR_168687 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_100919.1 | |tss_id=mm_100919.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 16:28, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6292160 |
|---|---|
| End of the center position in the TSS region: | 6292161 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_168687 |
|---|---|
| Distance: | -96 |
| Num_trans: | 2 |
| All_trans: | NR_168687:-96 AK085849:310 |
TATA-Box annotation
| Distance to TSS: | -9 |
|---|---|
| Nearest PromoterID: | NM_001361904 |
| Entrez ID: | 18293 |
| Nearest Unigene: | Mm.276348 |
| Nearest Refseq: | NM_010956 |
| Nearest Ensembl: | ENSMUSG00000020456 |
| Gene Name: | predicted gene, 46270 |
| Gene Alias: | 2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192 |
| Gene Description: | oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
