Difference between revisions of "TSS:Mm 100923.1"
From referenceTSS
| Line 2: | Line 2: | ||
|H2a.z-2= | |H2a.z-2= | ||
|H2av= | |H2av= | ||
| − | |all_trans=AK168110:0 BC147293:0 BC147294:0 BC147741:0 BC147751:0 ENSMUST00000109737.8:-4 NM_029938:-4 | + | |all_trans=AK168110:0 BC147293:0 BC147294:0 BC147741:0 BC147751:0 ENSMUST00000109737.8:-4 NM_029938:-4 NM_001347064:-4 AK155105:-6 AK021267:20 ENSMUST00000093346.5:33 BC028539:33 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.165 | |cpg_percent=0.165 | ||
| Line 11: | Line 11: | ||
|entrez_id=77605 | |entrez_id=77605 | ||
|gc_percent=0.731343 | |gc_percent=0.731343 | ||
| − | |gene_alias=C530002L11Rik | + | |gene_alias=C530002L11Rik{{!}}H2A.Z2{{!}}H2a.z-2{{!}}H2av{{!}}Tg(Wnt1-cre)11Rth{{!}}Wnt1-Cre{{!}}Wnt1::Cre{{!}}Wnt1cre |
| − | |gene_description= | + | |gene_description=H2A histone family, member V |
|gene_id=77605 | |gene_id=77605 | ||
| − | |gene_name= | + | |gene_name=H2A.Z histone variant 2 |
|gene_source=MGI:1924855 | |gene_source=MGI:1924855 | ||
| − | |gene_symbol= | + | |gene_symbol=H2az2 |
| − | |gene_synonyms=C530002L11Rik | + | |gene_synonyms=C530002L11Rik H2A.Z2 H2afv |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:1924855 | |hgnc_mgi_id=MGI:1924855 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_029938 | |nearest_refseq=NM_029938 | ||
|nearest_unigene=Mm.27624 | |nearest_unigene=Mm.27624 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=6444384 | |start=6444384 | ||
Revision as of 16:28, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6444411 |
|---|---|
| End of the center position in the TSS region: | 6444412 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK168110 BC147293 BC147294 BC147741 BC147751 |
|---|---|
| Distance: | 0 |
| Num_trans: | 12 |
| All_trans: | AK168110:0 BC147293:0 BC147294:0 BC147741:0 BC147751:0 ENSMUST00000109737.8:-4 NM_029938:-4 NM_001347064:-4 AK155105:-6 AK021267:20 ENSMUST00000093346.5:33 BC028539:33 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NM_029938 |
| Entrez ID: | 77605 |
| Nearest Unigene: | Mm.27624 |
| Nearest Refseq: | NM_029938 |
| Nearest Ensembl: | ENSMUSG00000041126 |
| Gene Name: | H2A.Z histone variant 2 |
| Gene Alias: | C530002L11Rik|H2A.Z2|H2a.z-2|H2av|Tg(Wnt1-cre)11Rth|Wnt1-Cre|Wnt1::Cre|Wnt1cre |
| Gene Description: | H2A histone family, member V |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.731343 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
