Difference between revisions of "TSS:Mm 100940.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|OTTMUSG00000005115= | |OTTMUSG00000005115= | ||
| − | |all_trans= | + | |all_trans=AK032971:-341 KY467466:-343 NR_045893:-357 AK160548:-357 ENSMUST00000134527.2:-360 ENSMUST00000124818.2:-363 ENSMUST00000147762.8:-376 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance=- | + | |distance=-341 |
|distance_to_tss=361 | |distance_to_tss=361 | ||
|end=6528403 | |end=6528403 | ||
| Line 13: | Line 13: | ||
|gene_description=small nucleolar RNA host gene 15 | |gene_description=small nucleolar RNA host gene 15 | ||
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=Snhg15 |
|gene_source=MGI:3650059 | |gene_source=MGI:3650059 | ||
|gene_symbol=Snhg15 | |gene_symbol=Snhg15 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NR_045893 | |nearest_refseq=NR_045893 | ||
|nearest_unigene=Mm.459507 | |nearest_unigene=Mm.459507 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=6528394 | |start=6528394 | ||
|start_of_center_position=6528398 | |start_of_center_position=6528398 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=AK032971 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100940.1 | |tss_id=mm_100940.1 | ||
Latest revision as of 16:29, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 6528398 |
|---|---|
| End of the center position in the TSS region: | 6528399 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK032971 |
|---|---|
| Distance: | -341 |
| Num_trans: | 7 |
| All_trans: | AK032971:-341 KY467466:-343 NR_045893:-357 AK160548:-357 ENSMUST00000134527.2:-360 ENSMUST00000124818.2:-363 ENSMUST00000147762.8:-376 |
TATA-Box annotation
| Distance to TSS: | 361 |
|---|---|
| Nearest PromoterID: | NR_045893 |
| Entrez ID: | 100041286 |
| Nearest Unigene: | Mm.459507 |
| Nearest Refseq: | NR_045893 |
| Nearest Ensembl: | ENSMUSG00000085156 |
| Gene Name: | Snhg15 |
| Gene Alias: | Gm11974 |
| Gene Description: | small nucleolar RNA host gene 15 |
| Gene Type: | ncRNA |
| CpG%: | 0.045 |
| GC%: | 0.547264 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
