Difference between revisions of "TSS:Mm 100954.1"
From referenceTSS
| Line 6: | Line 6: | ||
|R74877= | |R74877= | ||
|Tb-12= | |Tb-12= | ||
| − | |all_trans=ENSMUST00000131815.7:-226 BC016483:-227 BC031155:-230 AK129245:-230 BC031910:-241 ENSMUST00000156969.7:-247 ENSMUST00000000394.13:-247 ENSMUST00000150697.7:-247 AK028966:-247 AK168088:-268 AK144813:-268 AK166760:-268 ENSMUST00000189268.6:-271 ENSMUST00000136682.7 | + | |all_trans=NM_001362714:174 NM_001362715:174 NM_001362713:174 NM_001362716:174 ENSMUST00000131815.7:-226 BC016483:-227 BC031155:-230 AK129245:-230 BC031910:-241 ENSMUST00000156969.7:-247 ENSMUST00000000394.13:-247 ENSMUST00000150697.7:-247 AK028966:-247 AK168088:-268 AK144813:-268 AK166760:-268 ENSMUST00000189268.6:-271 ENSMUST00000136682.7:-271 NM_001130457:-271 NM_134011:-271 ENSMUST00000144463.1:327 LF226150:-418 MA461727:-418 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| − | |distance= | + | |distance=174 |
| − | |distance_to_tss= | + | |distance_to_tss=-179 |
|end=6625796 | |end=6625796 | ||
|end_of_center_position=6625791 | |end_of_center_position=6625791 | ||
|entrez_id=21379 | |entrez_id=21379 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=2310042P22Rik | + | |gene_alias=2310042P22Rik{{!}}AA120735{{!}}AA408001{{!}}AI527316{{!}}Cpr2{{!}}R74877{{!}}Tb-12 |
|gene_description=transforming growth factor beta regulated gene 4 | |gene_description=transforming growth factor beta regulated gene 4 | ||
|gene_id=21379 | |gene_id=21379 | ||
| Line 26: | Line 26: | ||
|mKIAA0948= | |mKIAA0948= | ||
|nearest_ensembl=ENSMUSG00000000384 | |nearest_ensembl=ENSMUSG00000000384 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001362716 |
|nearest_refseq=NM_134011 | |nearest_refseq=NM_134011 | ||
|nearest_unigene=Mm.247761 | |nearest_unigene=Mm.247761 | ||
| − | |num_trans= | + | |num_trans=23 |
|species=mouse | |species=mouse | ||
|start=6625785 | |start=6625785 | ||
|start_of_center_position=6625790 | |start_of_center_position=6625790 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001362714 NM_001362715 NM_001362713 NM_001362716 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100954.1 | |tss_id=mm_100954.1 | ||
Revision as of 16:29, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6625790 |
|---|---|
| End of the center position in the TSS region: | 6625791 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001362714 NM_001362715 NM_001362713 NM_001362716 |
|---|---|
| Distance: | 174 |
| Num_trans: | 23 |
| All_trans: | NM_001362714:174 NM_001362715:174 NM_001362713:174 NM_001362716:174 ENSMUST00000131815.7:-226 BC016483:-227 BC031155:-230 AK129245:-230 BC031910:-241 ENSMUST00000156969.7:-247 ENSMUST00000000394.13:-247 ENSMUST00000150697.7:-247 AK028966:-247 AK168088:-268 AK144813:-268 AK166760:-268 ENSMUST00000189268.6:-271 ENSMUST00000136682.7:-271 NM_001130457:-271 NM_134011:-271 ENSMUST00000144463.1:327 LF226150:-418 MA461727:-418 |
TATA-Box annotation
| Distance to TSS: | -179 |
|---|---|
| Nearest PromoterID: | NM_001362716 |
| Entrez ID: | 21379 |
| Nearest Unigene: | Mm.247761 |
| Nearest Refseq: | NM_134011 |
| Nearest Ensembl: | ENSMUSG00000000384 |
| Gene Name: | transforming growth factor beta regulated gene 4 |
| Gene Alias: | 2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12 |
| Gene Description: | transforming growth factor beta regulated gene 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
