Difference between revisions of "TSS:Mm 10096.1"
From referenceTSS
| Line 3: | Line 3: | ||
|Art= | |Art= | ||
|Snm1l= | |Snm1l= | ||
| − | |all_trans=ENSMUST00000100463.9:0 ENSMUST00000061852.11:0 ENSMUST00000132565.7:0 ENSMUST00000102988.9:0 ENSMUST00000146027.7:0 ENSMUST00000115066.7:0 ENSMUST00000131433.1:0 NM_001110214 | + | |all_trans=ENSMUST00000100463.9:0 ENSMUST00000061852.11:0 ENSMUST00000132565.7:0 ENSMUST00000102988.9:0 ENSMUST00000146027.7:0 ENSMUST00000115066.7:0 ENSMUST00000131433.1:0 NM_001110214:0 NM_001302674:0 NM_001362904:0 NM_001302684:0 NM_146114:0 NM_175683:0 NM_001362903:0 AF387731:0 AK037126:0 AK088810:0 AK052369:0 BC108935:0 AK166324:0 AK052490:0 AK038788:0 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| Line 12: | Line 12: | ||
|entrez_id=227525 | |entrez_id=227525 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=9930121L06Rik | + | |gene_alias=9930121L06Rik{{!}}AI661365{{!}}Art{{!}}Snm1l |
|gene_description=DNA cross-link repair 1C | |gene_description=DNA cross-link repair 1C | ||
|gene_id=227525 | |gene_id=227525 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_146114 | |nearest_refseq=NM_146114 | ||
|nearest_unigene=Mm.23483 | |nearest_unigene=Mm.23483 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=mouse | |species=mouse | ||
|start=3424123 | |start=3424123 | ||
|start_of_center_position=3424165 | |start_of_center_position=3424165 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENSMUST00000100463.9 ENSMUST00000061852.11 ENSMUST00000132565.7 ENSMUST00000102988.9 ENSMUST00000146027.7 ENSMUST00000115066.7 ENSMUST00000131433.1 NM_001110214 NM_001302684 NM_146114 NM_175683 | + | |transcript_name=ENSMUST00000100463.9 ENSMUST00000061852.11 ENSMUST00000132565.7 ENSMUST00000102988.9 ENSMUST00000146027.7 ENSMUST00000115066.7 ENSMUST00000131433.1 NM_001110214 NM_001302674 NM_001362904 NM_001302684 NM_146114 NM_175683 NM_001362903 AF387731 AK037126 AK088810 AK052369 BC108935 AK166324 AK052490 AK038788 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_10096.1 | |tss_id=mm_10096.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q32MX8 Q3TLT6 Q8K4J0 | + | |uniprot_id=Q32MX8 Q3TLT6 Q8K4J0 |
}} | }} | ||
Revision as of 16:29, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3424165 |
|---|---|
| End of the center position in the TSS region: | 3424166 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000100463.9 ENSMUST00000061852.11 ENSMUST00000132565.7 ENSMUST00000102988.9 ENSMUST00000146027.7 ENSMUST00000115066.7 ENSMUST00000131433.1 NM_001110214 NM_001302674 NM_001362904 NM_001302684 NM_146114 NM_175683 NM_001362903 AF387731 AK037126 AK088810 AK052369 BC108935 AK166324 AK052490 AK038788 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENSMUST00000100463.9:0 ENSMUST00000061852.11:0 ENSMUST00000132565.7:0 ENSMUST00000102988.9:0 ENSMUST00000146027.7:0 ENSMUST00000115066.7:0 ENSMUST00000131433.1:0 NM_001110214:0 NM_001302674:0 NM_001362904:0 NM_001302684:0 NM_146114:0 NM_175683:0 NM_001362903:0 AF387731:0 AK037126:0 AK088810:0 AK052369:0 BC108935:0 AK166324:0 AK052490:0 AK038788:0 |
TATA-Box annotation
| Distance to TSS: | 34 |
|---|---|
| Nearest PromoterID: | NM_001302684 |
| Entrez ID: | 227525 |
| Nearest Unigene: | Mm.23483 |
| Nearest Refseq: | NM_146114 |
| Nearest Ensembl: | ENSMUSG00000026648 |
| Gene Name: | DNA cross-link repair 1C |
| Gene Alias: | 9930121L06Rik|AI661365|Art|Snm1l |
| Gene Description: | DNA cross-link repair 1C |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
