Difference between revisions of "TSS:Mm 100971.1"
From referenceTSS
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENSMUST00000139769.1:-117 NR_046025 | + | |all_trans=ENSMUST00000139769.1:-117 NR_046025:-117 AK076664:-117 ENSMUST00000119236.1:422 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 9: | Line 9: | ||
|entrez_id=626419 | |entrez_id=626419 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias= | + | |gene_alias=- |
|gene_description=predicted gene 11981 | |gene_description=predicted gene 11981 | ||
|gene_id=626419 | |gene_id=626419 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NR_046025 | |nearest_refseq=NR_046025 | ||
|nearest_unigene=Mm.390334 | |nearest_unigene=Mm.390334 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=mouse | |species=mouse | ||
|start=6719916 | |start=6719916 | ||
|start_of_center_position=6719918 | |start_of_center_position=6719918 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENSMUST00000139769.1 NR_046025 | + | |transcript_name=ENSMUST00000139769.1 NR_046025 AK076664 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100971.1 | |tss_id=mm_100971.1 | ||
Revision as of 16:29, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 6719918 |
|---|---|
| End of the center position in the TSS region: | 6719919 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000139769.1 NR_046025 AK076664 |
|---|---|
| Distance: | -117 |
| Num_trans: | 4 |
| All_trans: | ENSMUST00000139769.1:-117 NR_046025:-117 AK076664:-117 ENSMUST00000119236.1:422 |
TATA-Box annotation
| Distance to TSS: | 119 |
|---|---|
| Nearest PromoterID: | NR_046025 |
| Entrez ID: | 626419 |
| Nearest Unigene: | Mm.390334 |
| Nearest Refseq: | NR_046025 |
| Nearest Ensembl: | ENSMUSG00000086808 |
| Gene Name: | predicted gene 11981 |
| Gene Alias: | - |
| Gene Description: | predicted gene 11981 |
| Gene Type: | ncRNA |
| CpG%: | 0.025 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
