Difference between revisions of "TSS:Mm 100989.1"
From referenceTSS
| Line 2: | Line 2: | ||
|IGFBP-3= | |IGFBP-3= | ||
|IGgfbp3= | |IGgfbp3= | ||
| − | |all_trans=ENSMUST00000135887.2:247 NM_008343:247 | + | |all_trans=LF203001:-243 MA438578:-243 LF198377:246 MA433954:246 ENSMUST00000135887.2:247 NM_008343:247 LF204676:247 MA440253:247 BC058261:264 ENSMUST00000020702.10:273 BC031421:273 X81581:339 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.05 | |cpg_percent=0.05 | ||
| − | |distance= | + | |distance=-243 |
|distance_to_tss=-251 | |distance_to_tss=-251 | ||
|end=7214179 | |end=7214179 | ||
| Line 11: | Line 11: | ||
|entrez_id=16009 | |entrez_id=16009 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=AI649005 | + | |gene_alias=AI649005{{!}}IGFBP-3{{!}}IGgfbp3 |
|gene_description=insulin-like growth factor binding protein 3 | |gene_description=insulin-like growth factor binding protein 3 | ||
|gene_id=16009 | |gene_id=16009 | ||
| − | |gene_name= | + | |gene_name=Igfbp3 |
|gene_source=MGI:96438 | |gene_source=MGI:96438 | ||
|gene_symbol=Igfbp3 | |gene_symbol=Igfbp3 | ||
| Line 24: | Line 24: | ||
|nearest_refseq=NM_008343 | |nearest_refseq=NM_008343 | ||
|nearest_unigene=Mm.29254 | |nearest_unigene=Mm.29254 | ||
| − | |num_trans= | + | |num_trans=12 |
|species=mouse | |species=mouse | ||
|start=7214169 | |start=7214169 | ||
|start_of_center_position=7214174 | |start_of_center_position=7214174 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=LF203001 MA438578 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_100989.1 | |tss_id=mm_100989.1 | ||
Latest revision as of 16:30, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 7214174 |
|---|---|
| End of the center position in the TSS region: | 7214175 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF203001 MA438578 |
|---|---|
| Distance: | -243 |
| Num_trans: | 12 |
| All_trans: | LF203001:-243 MA438578:-243 LF198377:246 MA433954:246 ENSMUST00000135887.2:247 NM_008343:247 LF204676:247 MA440253:247 BC058261:264 ENSMUST00000020702.10:273 BC031421:273 X81581:339 |
TATA-Box annotation
| Distance to TSS: | -251 |
|---|---|
| Nearest PromoterID: | NM_008343 |
| Entrez ID: | 16009 |
| Nearest Unigene: | Mm.29254 |
| Nearest Refseq: | NM_008343 |
| Nearest Ensembl: | ENSMUSG00000020427 |
| Gene Name: | Igfbp3 |
| Gene Alias: | AI649005|IGFBP-3|IGgfbp3 |
| Gene Description: | insulin-like growth factor binding protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.05 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
