Difference between revisions of "TSS:Mm 101071.1"
From referenceTSS
| Line 2: | Line 2: | ||
|Iam38= | |Iam38= | ||
|Sp38= | |Sp38= | ||
| − | |all_trans= | + | |all_trans=NM_001185153:18 NM_015785:18 ENSMUST00000020413.3:29 D17569:29 BC139450:49 BC139453:49 BC145628:49 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 11: | Line 11: | ||
|entrez_id=53604 | |entrez_id=53604 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| − | |gene_alias=4930486K01Rik | + | |gene_alias=4930486K01Rik{{!}}Iam38{{!}}Sp38 |
|gene_description=zona pellucida binding protein | |gene_description=zona pellucida binding protein | ||
|gene_id=53604 | |gene_id=53604 | ||
| Line 21: | Line 21: | ||
|hgnc_mgi_id=MGI:1855701 | |hgnc_mgi_id=MGI:1855701 | ||
|nearest_ensembl=ENSMUSG00000020193 | |nearest_ensembl=ENSMUSG00000020193 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_015785 |
|nearest_refseq=NM_015785 | |nearest_refseq=NM_015785 | ||
|nearest_unigene=Mm.9500 | |nearest_unigene=Mm.9500 | ||
| − | |num_trans= | + | |num_trans=7 |
|species=mouse | |species=mouse | ||
|start=11462436 | |start=11462436 | ||
|start_of_center_position=11462441 | |start_of_center_position=11462441 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_015785 | + | |transcript_name=NM_001185153 NM_015785 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=mm_101071.1 | |tss_id=mm_101071.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=B7ZP49 | + | |uniprot_id=B7ZP49 Q62522 |
}} | }} | ||
Revision as of 16:32, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11462441 |
|---|---|
| End of the center position in the TSS region: | 11462442 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001185153 NM_015785 |
|---|---|
| Distance: | 18 |
| Num_trans: | 7 |
| All_trans: | NM_001185153:18 NM_015785:18 ENSMUST00000020413.3:29 D17569:29 BC139450:49 BC139453:49 BC145628:49 |
TATA-Box annotation
| Distance to TSS: | -22 |
|---|---|
| Nearest PromoterID: | NM_015785 |
| Entrez ID: | 53604 |
| Nearest Unigene: | Mm.9500 |
| Nearest Refseq: | NM_015785 |
| Nearest Ensembl: | ENSMUSG00000020193 |
| Gene Name: | zona pellucida binding protein |
| Gene Alias: | 4930486K01Rik|Iam38|Sp38 |
| Gene Description: | zona pellucida binding protein |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
