Difference between revisions of "TSS:Mm 101077.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |Ikaros= | ||
| + | |LyF-1= | ||
| + | |Zfpn1a1= | ||
| + | |Znfn1a1= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| − | |distance= | + | |distance=NA |
|distance_to_tss=796 | |distance_to_tss=796 | ||
|end=11686736 | |end=11686736 | ||
| + | |end_of_center_position=11686721 | ||
|entrez_id=22778 | |entrez_id=22778 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=5832432G11Rik | + | |gene_alias=5832432G11Rik{{!}}Ikaros{{!}}LyF-1{{!}}Zfpn1a1{{!}}Znfn1a1{{!}}hlk-1{{!}}mKIAA4227 |
|gene_description=IKAROS family zinc finger 1 | |gene_description=IKAROS family zinc finger 1 | ||
|gene_name=Ikzf1 | |gene_name=Ikzf1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hlk-1= | ||
| + | |mKIAA4227= | ||
|nearest_ensembl=ENSMUSG00000018654 | |nearest_ensembl=ENSMUSG00000018654 | ||
|nearest_promoter_id=NM_001025597 | |nearest_promoter_id=NM_001025597 | ||
| Line 18: | Line 25: | ||
|species=mouse | |species=mouse | ||
|start=11686705 | |start=11686705 | ||
| + | |start_of_center_position=11686720 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=55(GCCTAAAAAGGC,+,0.00) |
|transcript_name= | |transcript_name= | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 16:32, 19 June 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 11686720 |
|---|---|
| End of the center position in the TSS region: | 11686721 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | NA |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 796 |
|---|---|
| Nearest PromoterID: | NM_001025597 |
| Entrez ID: | 22778 |
| Nearest Unigene: | Mm.103545 |
| Nearest Refseq: | NM_009578 |
| Nearest Ensembl: | ENSMUSG00000018654 |
| Gene Name: | Ikzf1 |
| Gene Alias: | 5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227 |
| Gene Description: | IKAROS family zinc finger 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 55(GCCTAAAAAGGC,+,0.00) |
