Difference between revisions of "TSS:Mm 10109.1"
From referenceTSS
| Line 3: | Line 3: | ||
|AA959793= | |AA959793= | ||
|AI132312= | |AI132312= | ||
| − | |all_trans=ENSMUST00000120117.1:6 | + | |all_trans=LF193113:-1 MA428690:-1 ENSMUST00000120117.1:6 LF258744:413 MA494321:413 |
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=-1 |
|distance_to_tss=-27119 | |distance_to_tss=-27119 | ||
|end=3686356 | |end=3686356 | ||
| Line 12: | Line 12: | ||
|entrez_id=66540 | |entrez_id=66540 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=3110001A13Rik | + | |gene_alias=3110001A13Rik{{!}}AA589595{{!}}AA959793{{!}}AI132312 |
| − | |gene_description= | + | |gene_description=family with sequence similarity 107, member B |
|gene_id= | |gene_id= | ||
| − | |gene_name= | + | |gene_name=Fam107b |
|gene_source=MGI:3650464 | |gene_source=MGI:3650464 | ||
|gene_symbol=Gm13181 | |gene_symbol=Gm13181 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NM_025626 | |nearest_refseq=NM_025626 | ||
|nearest_unigene=Mm.277864 | |nearest_unigene=Mm.277864 | ||
| − | |num_trans= | + | |num_trans=5 |
|species=mouse | |species=mouse | ||
|start=3686322 | |start=3686322 | ||
|start_of_center_position=3686339 | |start_of_center_position=3686339 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-34(CTCCTTAAAAAA,-,0.00) |
| − | |transcript_name= | + | |transcript_name=LF193113 MA428690 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=mm_10109.1 | |tss_id=mm_10109.1 | ||
Latest revision as of 16:32, 19 June 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3686339 |
|---|---|
| End of the center position in the TSS region: | 3686340 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | LF193113 MA428690 |
|---|---|
| Distance: | -1 |
| Num_trans: | 5 |
| All_trans: | LF193113:-1 MA428690:-1 ENSMUST00000120117.1:6 LF258744:413 MA494321:413 |
TATA-Box annotation
| Distance to TSS: | -27119 |
|---|---|
| Nearest PromoterID: | NM_025626 |
| Entrez ID: | 66540 |
| Nearest Unigene: | Mm.277864 |
| Nearest Refseq: | NM_025626 |
| Nearest Ensembl: | ENSMUSG00000026655 |
| Gene Name: | Fam107b |
| Gene Alias: | 3110001A13Rik|AA589595|AA959793|AI132312 |
| Gene Description: | family with sequence similarity 107, member B |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CTCCTTAAAAAA,-,0.00) |
