Difference between revisions of "TSS:Mm 101097.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=AF012881:-325 ENSMUST00000066237.9:-336 BC089594:-378 BC060989:-392 ENSMUST00000178704.7:-436 NM_001190448 | + | |all_trans=AF012881:-325 ENSMUST00000066237.9:-336 BC089594:-378 BC060989:-392 ENSMUST00000178704.7:-436 NM_001190448:-436 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_016672 | |nearest_refseq=NM_016672 | ||
|nearest_unigene=Mm.12906 | |nearest_unigene=Mm.12906 | ||
| − | |num_trans= | + | |num_trans=6 |
|species=mouse | |species=mouse | ||
|start=11897701 | |start=11897701 | ||
|start_of_center_position=11897704 | |start_of_center_position=11897704 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=64(GTTTTAATAGAA,+,0.00) |
|transcript_name=AF012881 | |transcript_name=AF012881 | ||
|tss_classification=no | |tss_classification=no | ||
Revision as of 16:32, 19 June 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11897704 |
|---|---|
| End of the center position in the TSS region: | 11897705 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF012881 |
|---|---|
| Distance: | -325 |
| Num_trans: | 6 |
| All_trans: | AF012881:-325 ENSMUST00000066237.9:-336 BC089594:-378 BC060989:-392 ENSMUST00000178704.7:-436 NM_001190448:-436 |
TATA-Box annotation
| Distance to TSS: | 439 |
|---|---|
| Nearest PromoterID: | NM_001190448 |
| Entrez ID: | 13195 |
| Nearest Unigene: | Mm.12906 |
| Nearest Refseq: | NM_016672 |
| Nearest Ensembl: | ENSMUSG00000020182 |
| Gene Name: | dopa decarboxylase |
| Gene Alias: | Aadc |
| Gene Description: | dopa decarboxylase |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 64(GTTTTAATAGAA,+,0.00) |
